SMTL ID : 6hf3.1 (1 other biounit)

M tuberculosis DprE1 in complex with a covalently bound nitrobenzothiazinone

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x 26J: 2-(4-(cyclohexylmethyl)piperazin-1-yl)-8-nitro-6-(trifluoromethyl)-4H-benzo[e][1,3]thiazin-4-one, bound form(Covalent)

26J.1: 13 residues within 4Å: Chain A: G.137, H.152, G.153, K.154, S.248, Q.356, V.385, K.387, F.389, N.405, C.407, K.438 Ligands: FAD.2 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:V.385 Water bridges: A:K.154 Halogen bonds: A:N.405

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.2: 34 residues within 4Å: Chain A: W.36, I.72, A.73, R.74, G.75, L.76, G.77, R.78, S.79, Y.80, N.83, A.84, M.94, A.114, P.136, G.137, T.138, V.141, T.142, G.144, G.145, A.148, C.149, I.151, H.152, N.198, G.199, G.202, I.203, I.204, Y.435, A.437, K.438 Ligands: 26J.1 23 PLIP interactions: 23 interactions with chain A Hydrophobic interactions: A:W.36, A:R.78, A:Y.80, A:T.138 Hydrogen bonds: A:G.75, A:L.76, A:G.77, A:R.78, A:S.79, A:N.83, A:G.137, A:T.142, A:H.152, A:H.152, A:I.204, A:I.204, A:Y.435, A:K.438 Water bridges: A:G.77, A:G.144, A:G.144, A:H.152 pi-Cation interactions: A:K.438

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Richter, A. et al., Novel insight into the reaction of nitro, nitroso and hydroxylamino benzothiazinones and of benzoxacinones with Mycobacterium tuberculosis DprE1. Sci Rep (2018)

Release Date

2018-08-29

Peptides

Decaprenylphosphoryl-beta-D-ribose oxidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Decaprenylphosphoryl-beta-D-ribose oxidase

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