SMTL ID : 6g8b.1

E. coli Aminopeptidase N solved by Native SAD from a dataset collected in 60 second with JUNGFRAU detector

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.37 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 6 residues within 4Å: Chain A: H.318, H.322, E.341, T.344, Y.402 Ligands: 7MF.5 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.318, A:H.322, A:E.341, A:E.341

1 x NA: SODIUM ION(Non-functional Binders)

NA.2: 4 residues within 4Å: Chain A: S.353, D.354, G.356, R.358 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.354 Water bridges: A:R.358

2 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.3: 6 residues within 4Å: Chain A: T.414, L.415, L.416, G.417, N.528, V.530 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.528 DMS.4: 6 residues within 4Å: Chain A: T.414, A.507, V.530, C.555, E.556, S.558 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:E.556

1 x 7MF: [(7~{S})-1-bromanyl-6,6-bis(oxidanyl)-4-phenyl-5,7,8,9-tetrahydrobenzo[7]annulen-7-yl]azanium(Non-covalent)

7MF.5: 16 residues within 4Å: Chain A: E.142, M.281, A.283, M.284, E.285, V.315, H.318, E.319, H.322, K.340, E.341, V.345, Y.397, Y.402, R.846 Ligands: ZN.1 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:M.281, A:V.315, A:H.318, A:Y.397, A:Y.402 Hydrogen bonds: A:E.142, A:E.319 pi-Stacking: A:H.318

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Leonarski, F. et al., Fast and accurate data collection for macromolecular crystallography using the JUNGFRAU detector. Nat. Methods (2018)

Release Date

2018-08-01

Peptides

Aminopeptidase N: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Aminopeptidase N

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