SMTL ID : 6gaz.1

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 28S ribosomal subunit.

Coordinates
PDB Format
Method
ELECTRON MICROSCOPY
Oligo State
hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer
Ligands
1 x GSP: 5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE(Non-covalent)
111 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)
1 x NA: SODIUM ION(Non-functional Binders)
1 x SPM: SPERMINE(Non-functional Binders)
3 x ZN: ZINC ION(Non-covalent)
1 x FME: N-FORMYLMETHIONINE(Non-covalent)
1 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Kummer, E. et al., Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. Nature (2018)
Release Date
2018-08-08
Peptides
Translation initiation factor IF-2, mitochondrial: A
Mitochondrial ribosomal protein L19: B
Mitochondrial ribosomal protein S2: D
Mitochondrial ribosomal protein S24: E
Mitochondrial ribosomal protein S5: F
Mitochondrial ribosomal protein S6: G
Mitochondrial ribosomal protein S7: H
Mitochondrial ribosomal protein S9: I
Mitochondrial ribosomal protein S10: J
Mitochondrial ribosomal protein S11: K
Mitochondrial ribosomal protein S12: L
Mitochondrial ribosomal protein S14: M
Mitochondrial ribosomal protein S15: N
bS16m, MRPS16: O
Mitochondrial ribosomal protein S17: P
Mitochondrial ribosomal protein S18C: Q
Mitochondrial ribosomal protein S21: R
unassigned secondary structure elements: U
Mitochondrial ribosomal protein S22: V
Mitochondrial ribosomal protein S23: W
Mitochondrial ribosomal protein S25: X
Mitochondrial ribosomal protein S26: Y
Mitochondrial ribosomal protein S27: Z
Mitoribosomal protein ms28, mrps28: 0
Death associated protein 3: 1
mS31, MRPS31: 2
Mitochondrial ribosomal protein S33: 3
Mitochondrial ribosomal protein S34: 4
Mitochondrial ribosomal protein S35: 5
Mitochondrial ribosomal protein S37: 6
Aurora kinase A interacting protein 1: 7
Mitochondrial ribosomal protein S39: 8
28S ribosomal protein S18b, mitochondrial: 9
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
BC
B
BT
D
AB
E
AC
F
AE
G
AF
H
AG
I
AI
J
AJ
K
AK
L
AL
M
AN
N
AO
O
AP
P
AQ
Q
AR
R
AU
U
AZ
V
Aa
W
Ab
X
Ac
Y
Ad
Z
Ae
0
Af
1
Ag
2
Ah
3
Ai
4
Aj
5
Ak
6
Am
7
An
8
Ao
9
Ap

Translation initiation factor IF-2, mitochondrial

Mitochondrial ribosomal protein L19

Mitochondrial ribosomal protein S2

Mitochondrial ribosomal protein S24

Mitochondrial ribosomal protein S5

Mitochondrial ribosomal protein S6

Mitochondrial ribosomal protein S7

Mitochondrial ribosomal protein S9

Mitochondrial ribosomal protein S10

Mitochondrial ribosomal protein S11

Mitochondrial ribosomal protein S12

Mitochondrial ribosomal protein S14

Mitochondrial ribosomal protein S15

bS16m, MRPS16

Mitochondrial ribosomal protein S17

Mitochondrial ribosomal protein S18C

Mitochondrial ribosomal protein S21

unassigned secondary structure elements

Mitochondrial ribosomal protein S22

Mitochondrial ribosomal protein S23

Mitochondrial ribosomal protein S25

Mitochondrial ribosomal protein S26

Mitochondrial ribosomal protein S27

Mitoribosomal protein ms28, mrps28

Death associated protein 3

mS31, MRPS31

Mitochondrial ribosomal protein S33

Mitochondrial ribosomal protein S34

Mitochondrial ribosomal protein S35

Mitochondrial ribosomal protein S37

Aurora kinase A interacting protein 1

Mitochondrial ribosomal protein S39

28S ribosomal protein S18b, mitochondrial

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