SMTL ID : 6gb2.1

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 39S ribosomal subunit.

Coordinates
PDB Format
Method
ELECTRON MICROSCOPY
Oligo State
hetero-7-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer
Ligands
216 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)
3 x ZN: ZINC ION(Non-covalent)
2 x 5GP: GUANOSINE-5'-MONOPHOSPHATE(Non-functional Binders)(Non-covalent)
2 x SPM: SPERMINE(Non-covalent)
1 x GSP: 5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE(Non-covalent)
1 x NA: SODIUM ION(Non-functional Binders)
1 x FME: N-FORMYLMETHIONINE(Non-covalent)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Kummer, E. et al., Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. Nature (2018)
Release Date
2018-08-08
Peptides
Mitochondrial ribosomal protein L12: ABCDEFZ
Mitochondrial ribosomal protein L27: G
Mitochondrial ribosomal protein L28: H
Mitochondrial ribosomal protein L47: I
'Mitochondrial ribosomal protein L30: J
'Mitochondrial ribosomal protein L55: K
Mitochondrial ribosomal protein L32: L
Mitochondrial ribosomal protein L33: M
Mitochondrial ribosomal protein L34: N
Mitochondrial ribosomal protein L35: O
Ribosomal protein: P
Translation initiation factor IF-2, mitochondrial: S
Mitochondrial ribosomal protein L2: T
ICT1: U
Mitochondrial ribosomal protein L4: V
Mitochondrial ribosomal protein L9: W
Mitochondrial ribosomal protein L10: X
Mitochondrial ribosomal protein L11: Y
Mitochondrial ribosomal protein L13: 0
Mitochondrial ribosomal protein L14: 1
Mitochondrial ribosomal protein L15: 2
Mitochondrial ribosomal protein L16: 3
Mitochondrial ribosomal protein L17: 4
Mitochondrial ribosomal protein L18: 5
Mitochondrial ribosomal protein L19: 6
Mitochondrial ribosomal protein L20: 7
Mitochondrial ribosomal protein L21: 8
Mitochondrial ribosomal protein L22: 9
Mitochondrial ribosomal protein L23: a
Mitochondrial ribosomal protein L24: b
Mitochondrial ribosomal protein L37: c
Mitochondrial ribosomal protein L38: d
Mitochondrial ribosomal protein L39: e
Mitochondrial ribosomal protein L40: f
Mitochondrial ribosomal protein L41: g
Mitochondrial ribosomal protein L42: h
Mitochondrial ribosomal protein L43: i
Mitochondrial ribosomal protein L44: j
Mitochondrial ribosomal protein L45: k
Mitochondrial ribosomal protein L46: l
Mitochondrial ribosomal protein L48: m
Mrpl34: n
Mitochondrial ribosomal protein L50: o
Mitochondrial ribosomal protein L51: p
Mitochondrial ribosomal protein L52: q
mL53, MRPL53: r
Uncharacterized protein: s
Mitochondrial ribosomal protein L57: t
Mitochondrial ribosomal protein L58: u
'Mitochondrial ribosomal protein L59: v
mL65, MRPS30: w
Mitochondrial ribosomal protein S18A: x
unassigned secondary structure elements: y
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
CL
B
DL
C
EL
D
FL
E
GL
F
HL
Z
BL
G
B0
H
B1
I
B2
J
B3
K
B4
L
B5
M
B6
N
B7
O
B8
P
B9
S
BC
T
BD
U
BE
V
BF
W
BI
X
BJ
Y
BK
0
BN
1
BO
2
BP
3
BQ
4
BR
5
BS
6
BT
7
BU
8
BV
9
BW
a
BX
b
BY
c
Ba
d
Bb
e
Bc
f
Bd
g
Be
h
Bf
i
Bg
j
Bh
k
Bi
l
Bj
m
Bk
n
Bl
o
Bm
p
Bn
q
Bo
r
Bp
s
Bq
t
Bt
u
Bu
v
Bv
w
Bw
x
Bx
y
Bz

Mitochondrial ribosomal protein L12

Toggle Identical (BDE)

Mitochondrial ribosomal protein L27

Mitochondrial ribosomal protein L28

Mitochondrial ribosomal protein L47

'Mitochondrial ribosomal protein L30

'Mitochondrial ribosomal protein L55

Mitochondrial ribosomal protein L32

Mitochondrial ribosomal protein L33

Mitochondrial ribosomal protein L34

Mitochondrial ribosomal protein L35

Ribosomal protein

Translation initiation factor IF-2, mitochondrial

Mitochondrial ribosomal protein L2

ICT1

Mitochondrial ribosomal protein L4

Mitochondrial ribosomal protein L9

Mitochondrial ribosomal protein L10

Mitochondrial ribosomal protein L11

Mitochondrial ribosomal protein L13

Mitochondrial ribosomal protein L14

Mitochondrial ribosomal protein L15

Mitochondrial ribosomal protein L16

Mitochondrial ribosomal protein L17

Mitochondrial ribosomal protein L18

Mitochondrial ribosomal protein L19

Mitochondrial ribosomal protein L20

Mitochondrial ribosomal protein L21

Mitochondrial ribosomal protein L22

Mitochondrial ribosomal protein L23

Mitochondrial ribosomal protein L24

Mitochondrial ribosomal protein L37

Mitochondrial ribosomal protein L38

Mitochondrial ribosomal protein L39

Mitochondrial ribosomal protein L40

Mitochondrial ribosomal protein L41

Mitochondrial ribosomal protein L42

Mitochondrial ribosomal protein L43

Mitochondrial ribosomal protein L44

Mitochondrial ribosomal protein L45

Mitochondrial ribosomal protein L46

Mitochondrial ribosomal protein L48

Mrpl34

Mitochondrial ribosomal protein L50

Mitochondrial ribosomal protein L51

Mitochondrial ribosomal protein L52

mL53, MRPL53

Uncharacterized protein

Mitochondrial ribosomal protein L57

Mitochondrial ribosomal protein L58

'Mitochondrial ribosomal protein L59

mL65, MRPS30

Mitochondrial ribosomal protein S18A

unassigned secondary structure elements

Related Entries With Identical Sequence

4ce4.1 | 4v19.1 | 4v1a.1 | 6gaw.1 | 6gaw.2 | 6gaw.3 | 6gaw.4 | 6gaw.5 | 6gaw.6 | 6gaw.7 | 6gaw.8 | 6gaw.9 | 6gaw.10 | 6gaw.11 | 6gaw.12 | 6gaw.13 | 6gaw.14 | 6gaw.15 | 6gaw.16 | 6gaw.18 | 6gaw.19 | 6gaw.20 | 6gaw.21 | 6gaw.22 | 6gaw.23 | 6gaw.24 | 6gaw.25 | 6gaw.26 | 6gaw.27 | 6gaw.28  more...