SMTL ID : 7nsh.1

39S mammalian mitochondrial large ribosomal subunit with mtRRF (post) and mtEFG2

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-7-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer

Ligands

221 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)

MG.1: 3 residues within 4Å: Chain 7: U.1165 Chain A: G.44, S.46 No protein-ligand interaction detected (PLIP) MG.2: 2 residues within 4Å: Chain E: R.99 Chain e: A.23 No protein-ligand interaction detected (PLIP) MG.3: 4 residues within 4Å: Chain H: S.23, G.26, P.27, F.30 3 PLIP interactions: 3 interactions with chain H Metal complexes: H:S.23, H:P.27, H:F.30 MG.4: 2 residues within 4Å: Chain 7: G.230 Chain O: D.99 1 PLIP interactions: 1 interactions with chain O Metal complexes: O:D.99 MG.5: 4 residues within 4Å: Chain U: P.13, R.15, G.19, H.21 2 PLIP interactions: 2 interactions with chain U Metal complexes: U:R.15, U:H.21 MG.8: 3 residues within 4Å: Chain 7: A.631, A.632, G.634 No protein-ligand interaction detected (PLIP) MG.9: 3 residues within 4Å: Chain 7: C.586, U.587, C.595 No protein-ligand interaction detected (PLIP) MG.10: 5 residues within 4Å: Chain 7: G.1056, G.1270, A.1274, C.1324, U.1327 No protein-ligand interaction detected (PLIP) MG.11: 4 residues within 4Å: Chain 7: G.187, A.1271, C.1321, C.1322 No protein-ligand interaction detected (PLIP) MG.12: 3 residues within 4Å: Chain 7: A.799, G.802, G.987 No protein-ligand interaction detected (PLIP) MG.13: 3 residues within 4Å: Chain 7: A.331, G.1411, A.1412 No protein-ligand interaction detected (PLIP) MG.14: 2 residues within 4Å: Chain 7: A.1410, G.1411 No protein-ligand interaction detected (PLIP) MG.15: 4 residues within 4Å: Chain 7: A.329, A.330, A.331, A.1412 No protein-ligand interaction detected (PLIP) MG.16: 4 residues within 4Å: Chain 7: G.448, G.1024 Chain U: I.12, G.14 1 PLIP interactions: 1 interactions with chain U Metal complexes: U:G.14 MG.17: 4 residues within 4Å: Chain 7: G.1150, G.1151, G.1319, A.1320 No protein-ligand interaction detected (PLIP) MG.18: 5 residues within 4Å: Chain 7: G.1270, A.1271, A.1320, C.1321, C.1322 No protein-ligand interaction detected (PLIP) MG.19: 3 residues within 4Å: Chain 7: U.287, A.835, A.836 No protein-ligand interaction detected (PLIP) MG.20: 2 residues within 4Å: Chain 7: A.243, A.349 No protein-ligand interaction detected (PLIP) MG.21: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.22: 2 residues within 4Å: Chain 7: A.1057, U.1266 No protein-ligand interaction detected (PLIP) MG.23: 3 residues within 4Å: Chain 7: C.1058, C.1059, A.1262 No protein-ligand interaction detected (PLIP) MG.24: 4 residues within 4Å: Chain 7: U.1330, C.1396, G.1397, U.1398 No protein-ligand interaction detected (PLIP) MG.25: 4 residues within 4Å: Chain 7: G.1048, U.1398, G.1399, A.1400 No protein-ligand interaction detected (PLIP) MG.26: 3 residues within 4Å: Chain 7: A.161, U.1017, U.1018 No protein-ligand interaction detected (PLIP) MG.27: 2 residues within 4Å: Chain 7: U.1023, A.1028 No protein-ligand interaction detected (PLIP) MG.28: 2 residues within 4Å: Chain 7: A.799, A.800 No protein-ligand interaction detected (PLIP) MG.29: 3 residues within 4Å: Chain 7: G.1269, G.1270 Ligands: MG.33 No protein-ligand interaction detected (PLIP) MG.30: 4 residues within 4Å: Chain 7: U.193, G.194, A.1326 Ligands: MG.104 No protein-ligand interaction detected (PLIP) MG.31: 4 residues within 4Å: Chain 7: C.182, U.193, G.194, G.356 No protein-ligand interaction detected (PLIP) MG.32: 3 residues within 4Å: Chain 7: G.195, U.1012, A.1013 No protein-ligand interaction detected (PLIP) MG.33: 3 residues within 4Å: Chain 7: A.192, G.1325 Ligands: MG.29 No protein-ligand interaction detected (PLIP) MG.34: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.35: 1 residues within 4Å: Chain 7: A.811 No protein-ligand interaction detected (PLIP) MG.36: 3 residues within 4Å: Chain 7: A.815, A.817, A.984 No protein-ligand interaction detected (PLIP) MG.37: 1 residues within 4Å: Chain 7: U.1142 No protein-ligand interaction detected (PLIP) MG.38: 3 residues within 4Å: Chain 7: A.646, A.647, A.1000 No protein-ligand interaction detected (PLIP) MG.39: 1 residues within 4Å: Chain 7: U.645 No protein-ligand interaction detected (PLIP) MG.40: 2 residues within 4Å: Chain 7: U.641, A.1009 No protein-ligand interaction detected (PLIP) MG.41: 3 residues within 4Å: Chain 7: C.435, C.449, U.450 No protein-ligand interaction detected (PLIP) MG.42: 2 residues within 4Å: Chain 7: U.450, C.1321 No protein-ligand interaction detected (PLIP) MG.43: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.44: 5 residues within 4Å: Chain 7: G.352, U.375, A.376, G.377, U.1063 No protein-ligand interaction detected (PLIP) MG.45: 2 residues within 4Å: Chain 7: G.377, A.432 No protein-ligand interaction detected (PLIP) MG.46: 2 residues within 4Å: Chain 7: G.377 Chain r: K.54 No protein-ligand interaction detected (PLIP) MG.47: 6 residues within 4Å: Chain 7: U.444, C.446, G.1279, C.1280, A.1317, C.1318 No protein-ligand interaction detected (PLIP) MG.48: 2 residues within 4Å: Chain 7: G.111, A.114 No protein-ligand interaction detected (PLIP) MG.49: 2 residues within 4Å: Chain 7: U.196, U.1012 No protein-ligand interaction detected (PLIP) MG.50: 1 residues within 4Å: Chain 7: G.828 No protein-ligand interaction detected (PLIP) MG.51: 3 residues within 4Å: Chain 7: C.826, U.827, G.828 No protein-ligand interaction detected (PLIP) MG.52: 2 residues within 4Å: Chain 7: A.54, A.351 No protein-ligand interaction detected (PLIP) MG.53: 3 residues within 4Å: Chain 7: A.203, C.627, A.628 No protein-ligand interaction detected (PLIP) MG.54: 4 residues within 4Å: Chain 7: C.1020, G.1029 Chain k: V.299, A.300 No protein-ligand interaction detected (PLIP) MG.55: 3 residues within 4Å: Chain 7: U.287, C.288, A.836 No protein-ligand interaction detected (PLIP) MG.56: 2 residues within 4Å: Chain 7: C.989, U.992 No protein-ligand interaction detected (PLIP) MG.57: 1 residues within 4Å: Chain 7: A.643 No protein-ligand interaction detected (PLIP) MG.58: 2 residues within 4Å: Chain 7: G.642, A.1009 No protein-ligand interaction detected (PLIP) MG.59: 2 residues within 4Å: Chain 7: U.183, U.184 No protein-ligand interaction detected (PLIP) MG.60: 2 residues within 4Å: Chain 7: A.643, U.1438 No protein-ligand interaction detected (PLIP) MG.61: 2 residues within 4Å: Chain 7: U.375, U.1063 No protein-ligand interaction detected (PLIP) MG.62: 3 residues within 4Å: Chain 7: A.832, C.834, A.835 No protein-ligand interaction detected (PLIP) MG.63: 2 residues within 4Å: Chain 7: G.1033 Ligands: MG.182 No protein-ligand interaction detected (PLIP) MG.64: 3 residues within 4Å: Chain 7: A.150, A.151, G.152 No protein-ligand interaction detected (PLIP) MG.65: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.66: 4 residues within 4Å: Chain 7: A.161, G.162, C.174, C.175 No protein-ligand interaction detected (PLIP) MG.67: 2 residues within 4Å: Chain 7: G.1051, A.1052 No protein-ligand interaction detected (PLIP) MG.68: 2 residues within 4Å: Chain 7: C.1402, U.1434 No protein-ligand interaction detected (PLIP) MG.69: 3 residues within 4Å: Chain 7: U.877, A.896, A.965 No protein-ligand interaction detected (PLIP) MG.70: 1 residues within 4Å: Chain 7: A.1199 No protein-ligand interaction detected (PLIP) MG.71: 1 residues within 4Å: Chain 7: C.466 No protein-ligand interaction detected (PLIP) MG.72: 2 residues within 4Å: Chain 7: C.182, U.357 No protein-ligand interaction detected (PLIP) MG.73: 4 residues within 4Å: Chain 7: U.372, U.373, G.1253, A.1254 No protein-ligand interaction detected (PLIP) MG.74: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.75: 1 residues within 4Å: Chain 7: C.825 No protein-ligand interaction detected (PLIP) MG.76: 3 residues within 4Å: Chain 7: A.297, A.298, A.762 No protein-ligand interaction detected (PLIP) MG.77: 2 residues within 4Å: Chain 7: U.1149, G.1151 No protein-ligand interaction detected (PLIP) MG.78: 3 residues within 4Å: Chain 7: G.1056, G.1268, G.1325 No protein-ligand interaction detected (PLIP) MG.79: 2 residues within 4Å: Chain 7: A.706, U.754 No protein-ligand interaction detected (PLIP) MG.80: 3 residues within 4Å: Chain 7: U.1330, G.1331, U.1403 No protein-ligand interaction detected (PLIP) MG.81: 3 residues within 4Å: Chain 7: U.335, A.336, G.341 No protein-ligand interaction detected (PLIP) MG.82: 3 residues within 4Å: Chain 7: G.363, A.364, A.597 No protein-ligand interaction detected (PLIP) MG.83: 4 residues within 4Å: Chain 7: A.57, G.1064, G.1065, U.1144 No protein-ligand interaction detected (PLIP) MG.84: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.85: 2 residues within 4Å: Chain 7: G.1146, G.1147 No protein-ligand interaction detected (PLIP) MG.86: 1 residues within 4Å: Chain 7: G.1155 No protein-ligand interaction detected (PLIP) MG.87: 3 residues within 4Å: Chain 7: G.111, G.113 Chain l: G.149 No protein-ligand interaction detected (PLIP) MG.88: 2 residues within 4Å: Chain 7: A.1465 Chain f: D.56 No protein-ligand interaction detected (PLIP) MG.89: 4 residues within 4Å: Chain 7: A.54, A.55, A.57, C.58 No protein-ligand interaction detected (PLIP) MG.90: 4 residues within 4Å: Chain 7: A.286, U.830, U.831, A.836 No protein-ligand interaction detected (PLIP) MG.91: 3 residues within 4Å: Chain 7: G.482, U.483, A.584 No protein-ligand interaction detected (PLIP) MG.92: 1 residues within 4Å: Chain 7: A.200 No protein-ligand interaction detected (PLIP) MG.93: 3 residues within 4Å: Chain 7: A.56, G.82 Ligands: MG.189 No protein-ligand interaction detected (PLIP) MG.94: 3 residues within 4Å: Chain 7: U.1061, U.1148, U.1149 No protein-ligand interaction detected (PLIP) MG.95: 1 residues within 4Å: Chain 7: A.1210 No protein-ligand interaction detected (PLIP) MG.96: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.97: 3 residues within 4Å: Chain 7: A.290, U.1403, G.1404 No protein-ligand interaction detected (PLIP) MG.98: 1 residues within 4Å: Chain 7: G.1368 No protein-ligand interaction detected (PLIP) MG.99: 2 residues within 4Å: Chain 7: A.191, A.1049 No protein-ligand interaction detected (PLIP) MG.100: 1 residues within 4Å: Chain 7: A.191 No protein-ligand interaction detected (PLIP) MG.101: 3 residues within 4Å: Chain 7: A.1518, A.1522, A.1523 No protein-ligand interaction detected (PLIP) MG.102: 4 residues within 4Å: Chain 7: U.190, A.191, A.192, A.1026 No protein-ligand interaction detected (PLIP) MG.103: 1 residues within 4Å: Chain 7: G.1337 No protein-ligand interaction detected (PLIP) MG.104: 3 residues within 4Å: Chain 7: U.193, A.1326 Ligands: MG.30 No protein-ligand interaction detected (PLIP) MG.105: 4 residues within 4Å: Chain 7: U.633, U.1011, G.1053, A.1054 No protein-ligand interaction detected (PLIP) MG.106: 3 residues within 4Å: Chain 7: C.805, U.806, U.1373 No protein-ligand interaction detected (PLIP) MG.107: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.108: 2 residues within 4Å: Chain 7: A.189, A.467 No protein-ligand interaction detected (PLIP) MG.109: 2 residues within 4Å: Chain 7: A.872, G.967 No protein-ligand interaction detected (PLIP) MG.110: 5 residues within 4Å: Chain 7: A.804, C.805, U.806, U.1373, U.1374 No protein-ligand interaction detected (PLIP) MG.111: 4 residues within 4Å: Chain 7: G.1479, G.1480, G.1481, U.1502 No protein-ligand interaction detected (PLIP) MG.112: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.113: 4 residues within 4Å: Chain 7: C.1275, A.1276, U.1329, A.1395 No protein-ligand interaction detected (PLIP) MG.114: 1 residues within 4Å: Chain 7: G.348 No protein-ligand interaction detected (PLIP) MG.115: 1 residues within 4Å: Chain 7: C.677 No protein-ligand interaction detected (PLIP) MG.116: 2 residues within 4Å: Chain 7: A.1341, A.1364 No protein-ligand interaction detected (PLIP) MG.117: 1 residues within 4Å: Chain 7: A.267 No protein-ligand interaction detected (PLIP) MG.118: 3 residues within 4Å: Chain 7: A.253, G.254, G.319 No protein-ligand interaction detected (PLIP) MG.119: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.120: 4 residues within 4Å: Chain 7: G.1027, C.1050, A.1276, C.1322 No protein-ligand interaction detected (PLIP) MG.121: 2 residues within 4Å: Chain 7: C.935, A.936 No protein-ligand interaction detected (PLIP) MG.122: 1 residues within 4Å: Chain 7: A.1345 No protein-ligand interaction detected (PLIP) MG.123: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.124: 1 residues within 4Å: Chain 7: G.1566 No protein-ligand interaction detected (PLIP) MG.125: 1 residues within 4Å: Chain 7: A.797 No protein-ligand interaction detected (PLIP) MG.126: 1 residues within 4Å: Chain 7: C.1050 No protein-ligand interaction detected (PLIP) MG.127: 2 residues within 4Å: Chain 7: C.840, U.842 No protein-ligand interaction detected (PLIP) MG.128: 2 residues within 4Å: Chain 7: A.257, C.258 No protein-ligand interaction detected (PLIP) MG.129: 1 residues within 4Å: Chain 7: C.671 No protein-ligand interaction detected (PLIP) MG.130: 3 residues within 4Å: Chain 7: A.841, G.869, C.870 No protein-ligand interaction detected (PLIP) MG.131: 3 residues within 4Å: Chain 7: U.962, G.963, G.1416 No protein-ligand interaction detected (PLIP) MG.132: 2 residues within 4Å: Chain 7: G.1406, G.1430 No protein-ligand interaction detected (PLIP) MG.133: 1 residues within 4Å: Chain 7: C.65 No protein-ligand interaction detected (PLIP) MG.134: 2 residues within 4Å: Chain 7: C.898, U.966 No protein-ligand interaction detected (PLIP) MG.135: 2 residues within 4Å: Chain 7: U.293, U.1434 No protein-ligand interaction detected (PLIP) MG.136: 3 residues within 4Å: Chain 7: A.930, C.956, U.957 No protein-ligand interaction detected (PLIP) MG.137: 2 residues within 4Å: Chain 7: C.946, A.947 No protein-ligand interaction detected (PLIP) MG.138: 4 residues within 4Å: Chain 7: A.277, A.278, A.308, A.309 No protein-ligand interaction detected (PLIP) MG.139: 2 residues within 4Å: Chain 7: C.280, G.307 No protein-ligand interaction detected (PLIP) MG.140: 3 residues within 4Å: Chain 7: A.51, A.52, U.1143 No protein-ligand interaction detected (PLIP) MG.141: 3 residues within 4Å: Chain 7: A.253, G.254, C.255 No protein-ligand interaction detected (PLIP) MG.142: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.143: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.144: 1 residues within 4Å: Chain H: A.15 No protein-ligand interaction detected (PLIP) MG.145: 2 residues within 4Å: Chain 7: C.397, A.399 No protein-ligand interaction detected (PLIP) MG.146: 4 residues within 4Å: Chain 7: A.207, A.208, A.209, A.210 No protein-ligand interaction detected (PLIP) MG.147: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.148: 2 residues within 4Å: Chain 7: A.91, U.92 No protein-ligand interaction detected (PLIP) MG.149: 2 residues within 4Å: Chain 7: G.963, G.1415 No protein-ligand interaction detected (PLIP) MG.150: 2 residues within 4Å: Chain 7: A.783, G.784 No protein-ligand interaction detected (PLIP) MG.151: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.152: 4 residues within 4Å: Chain 7: A.781, A.782, A.783, G.784 No protein-ligand interaction detected (PLIP) MG.153: 2 residues within 4Å: Chain 7: C.396, A.414 No protein-ligand interaction detected (PLIP) MG.154: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.155: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.156: 2 residues within 4Å: Chain 7: A.278, G.307 No protein-ligand interaction detected (PLIP) MG.157: 3 residues within 4Å: Chain 7: A.1446, A.1542, U.1543 No protein-ligand interaction detected (PLIP) MG.158: 2 residues within 4Å: Chain 7: A.1172, A.1173 No protein-ligand interaction detected (PLIP) MG.159: 5 residues within 4Å: Chain 7: A.1046, A.1047, G.1048, A.1400, A.1437 No protein-ligand interaction detected (PLIP) MG.160: 5 residues within 4Å: Chain 7: G.113, A.114, A.129, A.130 Chain l: R.147 No protein-ligand interaction detected (PLIP) MG.161: 4 residues within 4Å: Chain 7: U.372, C.1251, G.1252, G.1253 No protein-ligand interaction detected (PLIP) MG.162: 3 residues within 4Å: Chain 7: U.53, C.58, G.1065 No protein-ligand interaction detected (PLIP) MG.163: 4 residues within 4Å: Chain 7: A.57, C.58, G.1064, G.1065 No protein-ligand interaction detected (PLIP) MG.164: 3 residues within 4Å: Chain 7: A.205, A.237, C.238 No protein-ligand interaction detected (PLIP) MG.165: 4 residues within 4Å: Chain 7: C.881, U.884, G.885, U.894 No protein-ligand interaction detected (PLIP) MG.166: 2 residues within 4Å: Chain 7: C.881, A.882 No protein-ligand interaction detected (PLIP) MG.167: 2 residues within 4Å: Chain 7: A.1072, A.1073 No protein-ligand interaction detected (PLIP) MG.168: 5 residues within 4Å: Chain 7: U.472, G.473, A.474 Chain 9: K.76 Ligands: MG.217 No protein-ligand interaction detected (PLIP) MG.169: 3 residues within 4Å: Chain 7: C.673, C.759, C.760 No protein-ligand interaction detected (PLIP) MG.170: 2 residues within 4Å: Chain 7: U.755, A.756 No protein-ligand interaction detected (PLIP) MG.171: 2 residues within 4Å: Chain 7: A.688, A.691 No protein-ligand interaction detected (PLIP) MG.172: 3 residues within 4Å: Chain 7: A.1276, U.1315, C.1396 No protein-ligand interaction detected (PLIP) MG.173: 2 residues within 4Å: Chain 7: C.1275, A.1276 No protein-ligand interaction detected (PLIP) MG.174: 4 residues within 4Å: Chain 7: A.837, G.975, A.976, G.977 No protein-ligand interaction detected (PLIP) MG.175: 1 residues within 4Å: Chain 7: A.83 No protein-ligand interaction detected (PLIP) MG.176: 1 residues within 4Å: Chain 7: A.286 No protein-ligand interaction detected (PLIP) MG.177: 3 residues within 4Å: Chain 7: U.993, A.994, U.1489 No protein-ligand interaction detected (PLIP) MG.178: 3 residues within 4Å: Chain 7: C.569, A.570, G.1034 No protein-ligand interaction detected (PLIP) MG.179: 1 residues within 4Å: Ligands: MG.180 No protein-ligand interaction detected (PLIP) MG.180: 4 residues within 4Å: Chain 7: U.1069, U.1070, U.1143 Ligands: MG.179 No protein-ligand interaction detected (PLIP) MG.181: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.182: 3 residues within 4Å: Chain 7: G.1033, G.1034 Ligands: MG.63 No protein-ligand interaction detected (PLIP) MG.183: 1 residues within 4Å: Chain 7: A.367 No protein-ligand interaction detected (PLIP) MG.184: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.185: 3 residues within 4Å: Chain 7: A.501, A.547, A.548 No protein-ligand interaction detected (PLIP) MG.186: 1 residues within 4Å: Chain 7: G.305 No protein-ligand interaction detected (PLIP) MG.187: 2 residues within 4Å: Chain 7: A.1515, U.1524 No protein-ligand interaction detected (PLIP) MG.188: 3 residues within 4Å: Chain 7: A.836, A.837, A.976 No protein-ligand interaction detected (PLIP) MG.189: 2 residues within 4Å: Chain 7: A.56 Ligands: MG.93 No protein-ligand interaction detected (PLIP) MG.190: 3 residues within 4Å: Chain 7: G.1277, U.1314, U.1394 No protein-ligand interaction detected (PLIP) MG.191: 3 residues within 4Å: Chain 7: G.324, G.325, U.326 No protein-ligand interaction detected (PLIP) MG.192: 1 residues within 4Å: Chain 7: G.1067 No protein-ligand interaction detected (PLIP) MG.193: 2 residues within 4Å: Chain 7: G.795, A.812 No protein-ligand interaction detected (PLIP) MG.194: 1 residues within 4Å: Chain 7: U.1362 No protein-ligand interaction detected (PLIP) MG.195: 2 residues within 4Å: Chain 7: A.1281, G.1313 No protein-ligand interaction detected (PLIP) MG.196: 3 residues within 4Å: Chain 7: U.527, G.529, A.530 No protein-ligand interaction detected (PLIP) MG.197: 3 residues within 4Å: Chain 7: A.1294, G.1295, U.1297 No protein-ligand interaction detected (PLIP) MG.198: 3 residues within 4Å: Chain 7: C.749, A.750 Chain H: F.48 No protein-ligand interaction detected (PLIP) MG.199: 1 residues within 4Å: Chain 7: A.1470 No protein-ligand interaction detected (PLIP) MG.200: 4 residues within 4Å: Chain 7: U.373, A.1250, C.1251, G.1253 No protein-ligand interaction detected (PLIP) MG.201: 5 residues within 4Å: Chain 7: C.188, A.192, A.1025, C.1322, U.1323 No protein-ligand interaction detected (PLIP) MG.202: 1 residues within 4Å: Chain 7: A.237 No protein-ligand interaction detected (PLIP) MG.203: 2 residues within 4Å: Chain 7: G.1056, A.1057 No protein-ligand interaction detected (PLIP) MG.204: 2 residues within 4Å: Chain 7: U.185 Ligands: 5GP.214 No protein-ligand interaction detected (PLIP) MG.205: 2 residues within 4Å: Chain 7: G.429, A.430 No protein-ligand interaction detected (PLIP) MG.206: 5 residues within 4Å: Chain 7: G.1404, A.1405, G.1406, U.1407, G.1431 No protein-ligand interaction detected (PLIP) MG.207: 1 residues within 4Å: Chain 7: U.1374 No protein-ligand interaction detected (PLIP) MG.208: 2 residues within 4Å: Chain 7: C.870, G.967 No protein-ligand interaction detected (PLIP) MG.209: 2 residues within 4Å: Chain 7: G.1462, A.1464 No protein-ligand interaction detected (PLIP) MG.210: 3 residues within 4Å: Chain 7: U.931, G.959, U.960 No protein-ligand interaction detected (PLIP) MG.211: 3 residues within 4Å: Chain 7: A.908, U.910, C.911 No protein-ligand interaction detected (PLIP) MG.212: 1 residues within 4Å: Chain 7: G.900 No protein-ligand interaction detected (PLIP) MG.217: 4 residues within 4Å: Chain 7: G.473, A.474 Chain 9: K.76 Ligands: MG.168 No protein-ligand interaction detected (PLIP) MG.220: 4 residues within 4Å: Ligands: GNP.219 Chain f: T.60, D.87, T.98 4 PLIP interactions: 2 interactions with chain f, 2 Ligand-Water interactions Metal complexes: f:T.60, f:T.98, H2O.1, H2O.1 MG.221: 4 residues within 4Å: Chain g: Y.132, D.133, R.136, S.137 2 PLIP interactions: 2 interactions with chain g Metal complexes: g:D.133, g:R.136 MG.222: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.223: 1 residues within 4Å: Chain g: N.272 No protein-ligand interaction detected (PLIP) MG.224: 5 residues within 4Å: Chain 7: A.1308 Chain i: H.181, L.183, P.184, F.185 1 PLIP interactions: 1 interactions with chain i Metal complexes: i:L.183 MG.225: 5 residues within 4Å: Chain 7: A.290, U.291, A.793 Chain k: Q.284, H.288 1 PLIP interactions: 1 interactions with chain k Metal complexes: k:H.288 MG.226: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.227: 4 residues within 4Å: Chain r: Q.94, T.128, Q.130, D.135 No protein-ligand interaction detected (PLIP) MG.228: 6 residues within 4Å: Chain 7: A.599, C.600 Chain r: R.43, R.44, G.46, R.47 2 PLIP interactions: 2 interactions with chain r Metal complexes: r:R.44, r:G.46 MG.229: 5 residues within 4Å: Chain 7: U.1558, A.1559, G.1560 Chain k: G.263 Chain s: H.11 2 PLIP interactions: 1 interactions with chain s, 1 interactions with chain k Metal complexes: s:H.11, k:G.263

3 x ZN: ZINC ION(Non-covalent)

ZN.6: 4 residues within 4Å: Chain Y: C.70, C.73, C.108 Chain n: C.64 4 PLIP interactions: 3 interactions with chain Y, 1 interactions with chain n Metal complexes: Y:C.70, Y:C.73, Y:C.108, n:C.64 ZN.7: 4 residues within 4Å: Chain 4: C.73, C.76, C.89, H.95 4 PLIP interactions: 4 interactions with chain 4 Metal complexes: 4:C.73, 4:C.76, 4:C.89, 4:H.95 ZN.218: 4 residues within 4Å: Chain b: C.110, C.113, C.123, C.126 4 PLIP interactions: 4 interactions with chain b Metal complexes: b:C.110, b:C.113, b:C.123, b:C.126

2 x 5GP: GUANOSINE-5'-MONOPHOSPHATE(Non-functional Binders)(Non-covalent)

5GP.213: 4 residues within 4Å: Chain 7: C.1235, G.1245, A.1246, A.1255 No protein-ligand interaction detected (PLIP) 5GP.214: 9 residues within 4Å: Chain 7: G.187, A.366, A.367, A.368, A.430, U.598, A.599 Ligands: MG.204 Chain w: K.182 1 PLIP interactions: 1 interactions with chain w Salt bridges: w:K.182

2 x SPM: SPERMINE(Non-covalent)

SPM.215: 8 residues within 4Å: Chain 7: G.295, C.296, A.297, A.689, C.763, A.764 Chain x: Y.156, H.157 No protein-ligand interaction detected (PLIP) SPM.216: 9 residues within 4Å: Chain 7: A.788, C.1556, C.1557, U.1558, G.1560 Chain s: S.10, R.13, V.14, R.16 3 PLIP interactions: 3 interactions with chain s Hydrophobic interactions: s:R.13 Hydrogen bonds: s:S.10, s:V.14

1 x GNP: PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER(Non-covalent)

GNP.219: 20 residues within 4Å: Ligands: MG.220 Chain f: H.54, I.55, D.56, A.57, G.58, K.59, T.60, T.61, V.79, I.97, T.98, P.119, H.121, N.171, K.172, D.174, S.307, A.308, L.309 21 PLIP interactions: 21 interactions with chain f Hydrogen bonds: f:D.56, f:D.56, f:A.57, f:G.58, f:K.59, f:K.59, f:T.60, f:T.60, f:T.61, f:T.61, f:T.98, f:T.98, f:P.119, f:P.119, f:K.172, f:K.172, f:A.308, f:L.309 Water bridges: f:T.60, f:T.60 Salt bridges: f:D.174

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kummer, E. et al., Structural basis of translation termination, rescue, and recycling in mammalian mitochondria. Mol.Cell (2021)

Release Date

2021-05-05

Peptides

Mitochondrial ribosomal protein L27: A
uL24m: B
Mitochondrial ribosomal protein L37: C
Mitochondrial ribosomal protein L35: D
Mitochondrial ribosomal protein L38: E
Mitochondrial ribosomal protein L39: F
Mitochondrial ribosomal protein L40: G
Mitochondrial ribosomal protein L41: H
mL42: I
Mitochondrial ribosomal protein L43: J
mL44: K
Mitochondrial ribosomal protein L45: L
Mitochondrial ribosomal protein L46: M
39S ribosomal protein L48, mitochondrial: N
Mrpl34: O
Mitochondrial ribosomal protein L50: P
Mitochondrial ribosomal protein L51: Q
mL52: R
mL53: S
mL54: T
Mitochondrial ribosomal protein L57: U
mL62 (ICT1): V
mL64: W
39S ribosomal protein S30, mitochondrial: X
Mitochondrial ribosomal protein S18A: Y
Mitochondrial ribosomal protein L12: Z12356j
Mitochondrial ribosomal protein L28: 0
Ribosomal protein: 4
Mitochondrial ribosomal protein L47: 8
uL30m: 9
bL31m: a
bL32m: b
bL33m: c
Mitochondrial ribosomal protein L34: d
Ribosome-releasing factor 2, mitochondrial: f
uL2m: g
Ribosome-recycling factor, mitochondrial: h
uL16m: i
ICT1: k
Mitochondrial ribosomal protein L4: l
Mitochondrial ribosomal protein L9: m
Mitochondrial ribosomal protein L10: n
Mitochondrial ribosomal protein L11: o
uL13m: p
uL14m: q
uL15m: r
bL17m: s
Mitochondrial ribosomal protein L18: t
Mitochondrial ribosomal protein L19: u
Mitochondrial ribosomal protein L20: v
Mitochondrial ribosomal protein L21: w
uL22m: x
uL23m: y

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B0

B
BY

C
Ba

D
B8

E
Bb

F
Bc

G
Bd

H
Be

I
Bf

J
Bg

K
Bh

L
Bi

M
Bj

N
Bk

O
Bl

P
Bm

Q
Bn

R
Bo

S
Bp

T
Bq

U
Bt

V
Bu

W
Bv

X
Bw

Y
Bx

Z
CL

1
DL

2
EL

3
FL

5
GL

6
HL

j
LL

0
B1

4
B9

8
B2

9
B3

a
B4

b
B5

c
B6

d
B7

f
BC

g
BD

h
BG

i
BQ

k
BE

l
BF

m
BI

n
BJ

o
BK

p
BN

q
BO

r
BP

s
BR

t
BS

u
BT

v
BU

w
BV

x
BW

y
BX

Mitochondrial ribosomal protein L27

uL24m

Mitochondrial ribosomal protein L37

Mitochondrial ribosomal protein L35

Mitochondrial ribosomal protein L38

Mitochondrial ribosomal protein L39

Mitochondrial ribosomal protein L40

Mitochondrial ribosomal protein L41

mL42

Mitochondrial ribosomal protein L43

mL44

Mitochondrial ribosomal protein L45

Mitochondrial ribosomal protein L46

39S ribosomal protein L48, mitochondrial

Mrpl34

Mitochondrial ribosomal protein L50

Mitochondrial ribosomal protein L51

mL52

mL53

mL54

Mitochondrial ribosomal protein L57

mL62 (ICT1)

mL64

39S ribosomal protein S30, mitochondrial

Mitochondrial ribosomal protein S18A

Mitochondrial ribosomal protein L12

Mitochondrial ribosomal protein L28

Ribosomal protein

Mitochondrial ribosomal protein L47

uL30m

bL31m

bL32m

bL33m

Mitochondrial ribosomal protein L34

Ribosome-releasing factor 2, mitochondrial

uL2m

Ribosome-recycling factor, mitochondrial

uL16m

ICT1

Mitochondrial ribosomal protein L4

Mitochondrial ribosomal protein L9

Mitochondrial ribosomal protein L10

Mitochondrial ribosomal protein L11

uL13m

uL14m

uL15m

bL17m

Mitochondrial ribosomal protein L18

Mitochondrial ribosomal protein L19

Mitochondrial ribosomal protein L20

Mitochondrial ribosomal protein L21

uL22m

uL23m

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