SMTL ID : 6gye.1 (1 other biounit)

Crystal structure of NadR protein in complex with NR

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: L.356, R.376, L.377, S.378 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:L.377, A:S.378, A:S.378 Salt bridges: A:R.376 SO4.2: 5 residues within 4Å: Chain A: K.65, Y.69, R.177, H.178 Ligands: NNR.7 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Y.69 Water bridges: A:H.178 Salt bridges: A:K.65, A:R.177, A:H.178 SO4.3: 7 residues within 4Å: Chain A: G.21, T.22, F.23, H.30, R.150, I.153, S.154 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:T.22, A:T.22, A:F.23, A:S.154 Water bridges: A:R.150, A:R.150 Salt bridges: A:H.30, A:R.150 SO4.4: 8 residues within 4Å: Chain A: S.188, A.189, S.190, T.191, G.192, K.193, T.194, R.214 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:S.190, A:T.191, A:T.191, A:T.191, A:G.192, A:K.193, A:T.194, A:T.194 Water bridges: A:T.195 Salt bridges: A:K.193, A:R.214 SO4.5: 3 residues within 4Å: Chain A: E.166, V.372, K.373 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.373 SO4.6: 3 residues within 4Å: Chain A: R.55, T.158, R.161 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.55, A:R.161

1 x NNR: Nicotinamide riboside(Non-covalent)

NNR.7: 10 residues within 4Å: Chain A: R.177, Y.240, N.243, S.244, N.248, L.258, D.291, E.292, R.293 Ligands: SO4.2 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:R.293 Hydrogen bonds: A:N.243, A:N.248, A:R.293, A:R.293, A:R.293

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Stetsenko, A. et al., Structural and Functional Characterization of NadR fromLactococcus lactis. Molecules (2020)

Release Date

2019-07-10

Peptides

Nicotinamide-nucleotide adenylyltransferase NadR family / Ribosylnicotinamide kinase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Nicotinamide-nucleotide adenylyltransferase NadR family / Ribosylnicotinamide kinase

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