SMTL ID : 6gyf.1 (1 other biounit)

Crystal structure of NadR protein in complex with NR

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

monomer

Ligands

1 x NMN: BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE(Non-covalent)

NMN.1: 12 residues within 4Å: Chain A: K.65, Y.69, R.177, H.178, Y.240, N.243, S.244, N.248, L.258, D.291, E.292, R.293 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:R.293 Hydrogen bonds: A:R.177, A:Y.240, A:N.248, A:N.248, A:R.293 Salt bridges: A:K.65, A:R.177, A:H.178

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 7 residues within 4Å: Chain A: G.21, T.22, F.23, H.30, R.150, I.153, S.154 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.22, A:F.23 Salt bridges: A:H.30, A:R.150 SO4.3: 8 residues within 4Å: Chain A: A.189, S.190, T.191, G.192, K.193, T.194, R.214, D.309 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:S.190, A:T.191, A:G.192, A:K.193, A:T.194, A:T.194 Salt bridges: A:K.193, A:R.214

2 x MG: MAGNESIUM ION(Non-covalent)

MG.4: 4 residues within 4Å: Chain A: R.266, K.270, R.329, E.333 No protein-ligand interaction detected (PLIP) MG.5: 3 residues within 4Å: Chain A: E.72, V.174, R.177 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Stetsenko, A. et al., Structural and Functional Characterization of NadR fromLactococcus lactis. Molecules (2020)

Release Date

2019-07-10

Peptides

Nicotinamide-nucleotide adenylyltransferase NadR family / Ribosylnicotinamide kinase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Nicotinamide-nucleotide adenylyltransferase NadR family / Ribosylnicotinamide kinase

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