SMTL ID : 6h0u.1

Glycogen synthase kinase-3 beta (GSK3) complex with a covalent [1,2,4]triazolo[1,5-a][1,3,5]triazine inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

2 x FKB: (2~{R})-3-[7-azanyl-5-(cyclohexylamino)-[1,2,4]triazolo[1,5-a][1,3,5]triazin-2-yl]-2-cyano-propanamide(Covalent)

FKB.1: 15 residues within 4Å: Chain A: I.62, V.70, A.83, K.85, V.110, L.132, D.133, Y.134, V.135, P.136, T.138, R.141, L.188, C.199, D.200 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:I.62, A:Y.134, A:T.138 Hydrogen bonds: A:D.133, A:V.135, A:V.135, A:D.200, A:D.200 FKB.4: 18 residues within 4Å: Chain B: I.62, F.67, V.70, A.83, K.85, V.110, L.132, D.133, Y.134, V.135, P.136, E.137, T.138, R.141, N.186, L.188, C.199, D.200 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:I.62, B:Y.134, B:T.138 Hydrogen bonds: B:D.133, B:V.135, B:V.135, B:D.200 Water bridges: B:E.97, B:N.186

1 x MLI: MALONATE ION(Non-functional Binders)

MLI.2: 7 residues within 4Å: Chain A: R.96, R.180, K.205, N.213, V.214 Chain B: F.291, K.292 8 PLIP interactions: 2 interactions with chain B, 6 interactions with chain A Hydrogen bonds: B:K.292, B:K.292, A:V.214 Hydrophobic interactions: A:K.205 Salt bridges: A:R.96, A:R.180, A:K.205, A:K.205

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 6 residues within 4Å: Chain A: Y.56, T.59, Y.71, K.86, S.118, N.129 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Y.56, A:K.86, A:S.118, A:S.118, A:N.129 GOL.5: 7 residues within 4Å: Chain A: F.291, K.292 Chain B: R.96, R.180, K.205, V.214 Ligands: GOL.6 6 PLIP interactions: 5 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:R.96, B:R.96, B:R.180, B:R.180, B:V.214, A:K.292 GOL.6: 6 residues within 4Å: Chain A: K.292 Chain B: R.96, G.202, S.203, Y.216 Ligands: GOL.5 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:R.96, B:G.202, B:Y.216, B:Y.216

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.7: 4 residues within 4Å: Chain B: H.106, C.107, R.167, E.366 Ligand excluded by PLIP CL.8: 1 residues within 4Å: Chain B: Y.161 Ligand excluded by PLIP

1 x NA: SODIUM ION(Non-functional Binders)

NA.9: 1 residues within 4Å: Chain B: E.283 2 PLIP interactions: 2 interactions with chain B Water bridges: B:E.283, B:E.283

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Redenti, S. et al., A Triazolotriazine-Based Dual GSK-3 beta /CK-1 delta Ligand as a Potential Neuroprotective Agent Presenting Two Different Mechanisms of Enzymatic Inhibition. Chemmedchem (2019)

Release Date

2019-05-15

Peptides

Glycogen synthase kinase-3 beta: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Glycogen synthase kinase-3 beta

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