SMTL ID : 6ibk.1

Crystal structure of human alpha-galactosidase A in complex with alpha-galactose configured cyclosulfamidate ME763

Coordinates
PDB Format
Method
X-RAY DIFFRACTION 1.99 Å
Oligo State
homo-dimer
Ligands
1 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
1 x NAG- NAG- BMA- MAN- MAN: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
3 x ACT: ACETATE ION(Non-functional Binders)
11 x SO4: SULFATE ION(Non-functional Binders)
12 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
2 x YTW: (3~{a}~{R},4~{S},5~{S},6~{S},7~{R},7~{a}~{S})-7-(hydroxymethyl)-2,2-bis(oxidanylidene)-3~{a},4,5,6,7,7~{a}-hexahydro-3~{H}-benzo[d][1,2,3]oxathiazole-4,5,6-triol(Non-covalent)
5 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Artola, M. et al., Alpha-d-Gal-cyclophellitol cyclosulfamidate is a Michaelis complex analog that stabilizes therapeutic lysosomal alpha-galactosidase A in Fabry disease. Chem Sci (2019)
Release Date
2019-10-09
Peptides
Alpha-galactosidase A: AB
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B

Alpha-galactosidase A

Related Entries With Identical Sequence

1r46.1 | 1r47.1 | 3gxn.1 | 3gxp.1 | 3gxt.1 | 3hg2.1 | 3hg4.1 | 3hg5.1 | 3s5y.1 | 3s5z.1 | 4nxs.1 | 6ibm.1 | 6ibr.1 | 6ibt.1