SMTL ID : 6iln.2 (3 other biounits)

Cryo-EM structure of full Echovirus 6 particle at PH 5.5

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-5-5-5-5-mer

Ligands

5 x SPH: SPHINGOSINE(Non-covalent)

SPH.1: 14 residues within 4Å: Chain A: I.85, T.87, L.97, F.105, V.107, I.134, Y.136, M.171, I.173, Y.182, N.184, L.209, F.230 Chain C: A.24 13 PLIP interactions: 12 interactions with chain A, 1 interactions with chain C Hydrophobic interactions: A:I.85, A:T.87, A:F.105, A:V.107, A:Y.136, A:Y.136, A:I.173, A:L.209, A:F.230, A:F.230, C:A.24 Hydrogen bonds: A:T.87, A:N.184 SPH.2: 14 residues within 4Å: Chain E: I.85, T.87, L.97, F.105, V.107, I.134, Y.136, M.171, I.173, Y.182, N.184, L.209, F.230 Chain G: A.24 13 PLIP interactions: 12 interactions with chain E, 1 interactions with chain G Hydrophobic interactions: E:I.85, E:T.87, E:F.105, E:V.107, E:Y.136, E:Y.136, E:I.173, E:L.209, E:F.230, E:F.230, G:A.24 Hydrogen bonds: E:T.87, E:N.184 SPH.3: 14 residues within 4Å: Chain I: I.85, T.87, L.97, F.105, V.107, I.134, Y.136, M.171, I.173, Y.182, N.184, L.209, F.230 Chain K: A.24 13 PLIP interactions: 12 interactions with chain I, 1 interactions with chain K Hydrophobic interactions: I:I.85, I:T.87, I:F.105, I:V.107, I:Y.136, I:Y.136, I:I.173, I:L.209, I:F.230, I:F.230, K:A.24 Hydrogen bonds: I:T.87, I:N.184 SPH.4: 14 residues within 4Å: Chain M: I.85, T.87, L.97, F.105, V.107, I.134, Y.136, M.171, I.173, Y.182, N.184, L.209, F.230 Chain O: A.24 13 PLIP interactions: 12 interactions with chain M, 1 interactions with chain O Hydrophobic interactions: M:I.85, M:T.87, M:F.105, M:V.107, M:Y.136, M:Y.136, M:I.173, M:L.209, M:F.230, M:F.230, O:A.24 Hydrogen bonds: M:T.87, M:N.184 SPH.5: 14 residues within 4Å: Chain Q: I.85, T.87, L.97, F.105, V.107, I.134, Y.136, M.171, I.173, Y.182, N.184, L.209, F.230 Chain S: A.24 13 PLIP interactions: 12 interactions with chain Q, 1 interactions with chain S Hydrophobic interactions: Q:I.85, Q:T.87, Q:F.105, Q:V.107, Q:Y.136, Q:Y.136, Q:I.173, Q:L.209, Q:F.230, Q:F.230, S:A.24 Hydrogen bonds: Q:T.87, Q:N.184

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhao, X. et al., Human Neonatal Fc Receptor Is the Cellular Uncoating Receptor for Enterovirus B. Cell (2019)

Release Date

2019-05-15

Peptides

Capsid protein VP1: AEIMQ
Capsid protein VP2: BFJNR
Capsid protein VP3: CGKOS
Capsid protein VP4: DHLPT

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E
A

I
A

M
A

Q
A

B
B

F
B

J
B

N
B

R
B

C
C

G
C

K
C

O
C

S
C

D
D

H
D

L
D

P
D

T
D

Capsid protein VP1

Capsid protein VP2

Capsid protein VP3

Capsid protein VP4

Related Entries With Identical Sequence