SMTL ID : 6imy.1

Crystal structure of V30M mutated transthyretin in complex with 4'-caroboxybenzo-18-Crown-6

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

homo-tetramer

Ligands

4 x AJU: 2,3,5,6,8,9,11,12,14,15-decahydro-1,4,7,10,13,16-benzohexaoxacyclooctadecine-18-carboxylic acid(Non-covalent)

AJU.1: 5 residues within 4Å: Chain A: R.53, I.58, N.59, Y.110, A.113 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:I.58 Hydrogen bonds: A:R.53, A:N.59 AJU.2: 6 residues within 4Å: Chain B: V.52, R.53, L.114, G.115, I.116 Chain C: I.116 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain C Hydrophobic interactions: B:V.52, B:R.53, C:I.116 Water bridges: C:S.117 AJU.3: 5 residues within 4Å: Chain C: R.53, I.58, N.59, Y.110, A.113 3 PLIP interactions: 3 interactions with chain C Hydrophobic interactions: C:I.58 Hydrogen bonds: C:R.53, C:N.59 AJU.4: 6 residues within 4Å: Chain A: I.116 Chain D: V.52, R.53, L.114, G.115, I.116 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain D Hydrophobic interactions: A:I.116, D:V.52, D:R.53 Water bridges: A:S.117

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yokoyama, T. et al., Crown Ethers as Transthyretin Amyloidogenesis Inhibitors. J. Med. Chem. (2019)

Release Date

2019-03-13

Peptides

Transthyretin: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Transthyretin

Related Entries With Identical Sequence