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SMTL ID : 6jc7.1
(1 other biounit)
Crystal structure of aminotransferase CrmG from Actinoalloteichus sp. WH1-2216-6 in complex with amino donor L-Ala
Coordinates
PDB Format
Method
X-RAY DIFFRACTION 2.20 Å
Oligo State
homo-dimer
Ligands
2 x
F0G
:
(E)-N-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene)-L-alanine
(Non-covalent)
F0G.1:
15 residues within 4Å:
Chain A:
F.55
,
S.119
,
G.120
,
A.121
,
N.124
,
F.207
,
H.208
,
G.209
,
E.282
,
D.315
,
V.317
,
Q.318
,
K.344
Chain B:
S.373
,
T.374
16
PLIP interactions
:
6 interactions with chain B
,
10 interactions with chain A
Hydrogen bonds:
B:T.374
,
B:T.374
,
A:G.120
,
A:A.121
,
A:N.124
,
A:Q.318
,
A:K.344
Water bridges:
B:N.118
,
B:S.372
,
B:S.372
,
B:F.375
Hydrophobic interactions:
A:F.207
,
A:V.317
Salt bridges:
A:K.344
,
A:R.486
pi-Stacking:
A:F.207
F0G.6:
15 residues within 4Å:
Chain A:
S.373
,
T.374
Chain B:
F.55
,
S.119
,
G.120
,
A.121
,
N.124
,
F.207
,
H.208
,
G.209
,
E.282
,
D.315
,
V.317
,
Q.318
,
K.344
19
PLIP interactions
:
14 interactions with chain B
,
5 interactions with chain A
Hydrophobic interactions:
B:F.55
,
B:F.207
,
B:V.317
Hydrogen bonds:
B:G.120
,
B:A.121
,
B:N.124
,
B:Q.318
,
B:K.344
,
A:T.374
,
A:T.374
Water bridges:
B:S.119
,
B:R.486
,
A:S.372
,
A:S.372
,
A:F.375
Salt bridges:
B:K.344
,
B:K.344
,
B:R.486
pi-Stacking:
B:F.207
4 x
GOL
:
GLYCEROL
(Non-functional Binders)
GOL.2:
3 residues within 4Å:
Chain A:
H.64
,
P.65
,
Y.492
No protein-ligand interaction detected (PLIP)
GOL.3:
10 residues within 4Å:
Chain A:
R.197
,
A.229
,
L.230
,
S.231
,
S.232
Chain B:
R.197
,
A.229
,
L.230
,
S.231
,
S.232
1
PLIP interactions
:
1 interactions with chain A
Hydrogen bonds:
A:S.232
GOL.4:
7 residues within 4Å:
Chain A:
E.27
,
Y.28
,
V.29
Chain B:
T.79
,
V.80
,
P.89
,
R.90
3
PLIP interactions
:
2 interactions with chain B
,
1 interactions with chain A
Hydrogen bonds:
B:V.80
Water bridges:
B:R.90
,
A:Y.28
GOL.5:
5 residues within 4Å:
Chain A:
R.108
,
R.305
,
R.336
,
D.338
,
R.359
4
PLIP interactions
:
4 interactions with chain A
Hydrogen bonds:
A:R.108
,
A:D.338
,
A:R.359
,
A:R.359
3 x
ACY
:
ACETIC ACID
(Non-functional Binders)
ACY.7:
3 residues within 4Å:
Chain B:
E.66
,
H.70
,
K.387
2
PLIP interactions
:
2 interactions with chain B
Salt bridges:
B:H.70
,
B:K.387
ACY.8:
3 residues within 4Å:
Chain B:
R.104
,
E.105
,
Y.400
1
PLIP interactions
:
1 interactions with chain B
Salt bridges:
B:R.104
ACY.9:
4 residues within 4Å:
Chain B:
D.100
,
I.101
,
R.104
,
E.393
2
PLIP interactions
:
2 interactions with chain B
Hydrophobic interactions:
B:D.100
Salt bridges:
B:R.104
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Xu, J. et al., Structural studies reveal flexible roof of active site responsible for omega-transaminase CrmG overcoming by-product inhibition. Commun Biol (2020)
Release Date
2020-02-05
Peptides
CrmG:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
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CrmG
Toggle Identical (AB)
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5dds.2
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5ddu.2
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5ddw.1
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6jc7.2
|
6jc8.1
|
6jc8.2
|
6jc9.1
|
6jc9.2
|
6jca.1
|
6jcb.1
|
6jcb.2
|
8jt3.1
|
8jt3.2
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