SMTL ID : 6jnr.1

RXRa structure complexed with CU-6PMN and SRC1 peptide.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

hetero-2-2-mer

Ligands

2 x WY5: 7-oxidanyl-2-oxidanylidene-6-(3,5,5,8,8-pentamethyl-6,7-dihydronaphthalen-2-yl)chromene-3-carboxylic acid(Non-covalent)

WY5.1: 18 residues within 4Å: Chain A: I.49, A.52, A.53, Q.56, N.87, L.90, F.94, R.97, I.105, L.107, A.108, I.126, F.127, V.130, C.213, H.216, L.217, F.220 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:I.49, A:Q.56, A:L.90, A:F.94, A:F.94, A:I.105, A:I.126, A:F.127, A:V.130, A:H.216, A:L.217, A:F.220 Hydrogen bonds: A:N.87, A:N.87, A:A.108 Water bridges: A:Q.56, A:R.97 Salt bridges: A:R.97 WY5.2: 17 residues within 4Å: Chain B: I.49, A.52, A.53, Q.56, N.87, L.90, F.94, R.97, L.107, A.108, I.126, F.127, V.130, C.213, H.216, L.217, F.220 15 PLIP interactions: 15 interactions with chain B Hydrophobic interactions: B:I.49, B:F.94, B:F.94, B:I.126, B:F.127, B:V.130, B:H.216, B:L.217, B:F.220 Hydrogen bonds: B:N.87, B:N.87, B:A.108 Water bridges: B:Q.56, B:Q.56 Salt bridges: B:R.97

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kawasaki, M. et al., RXRa structure complexed with CU-6PMN and SRC1 peptide. To Be Published

Release Date

2020-03-25

Peptides

Retinoic acid receptor RXR-alpha: AB
HIS-LYS-ILE-LEU-HIS-ARG-LEU-LEU-GLN: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Retinoic acid receptor RXR-alpha

HIS-LYS-ILE-LEU-HIS-ARG-LEU-LEU-GLN

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