SMTL ID : 6lb5.1

Crystal structure of dimeric RXR-LBD complexed with full agonist NEt-3IB and TIF2 co-activator

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

hetero-2-2-mer

Ligands

2 x E80: 6-[ethyl-[3-(2-methylpropoxy)-4-propan-2-yl-phenyl]amino]pyridine-3-carboxylic acid(Non-covalent)

E80.1: 17 residues within 4Å: Chain A: I.49, A.52, A.53, Q.56, N.87, L.90, I.91, F.94, R.97, I.105, L.107, A.108, I.126, F.127, C.213, H.216, L.217 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:A.52, A:L.90, A:I.91, A:I.105, A:L.107, A:I.126, A:F.127, A:H.216, A:L.217, A:L.217 Hydrogen bonds: A:A.108 Water bridges: A:F.94 Salt bridges: A:R.97 pi-Stacking: A:F.94 E80.2: 15 residues within 4Å: Chain C: I.49, A.52, A.53, Q.56, W.86, N.87, L.90, I.91, F.94, R.97, L.107, A.108, I.126, C.213, H.216 9 PLIP interactions: 9 interactions with chain C Hydrophobic interactions: C:A.52, C:L.90, C:I.91, C:I.126, C:H.216 Hydrogen bonds: C:A.108 Water bridges: C:R.97 Salt bridges: C:R.97 pi-Stacking: C:F.94

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Imai, D. et al., Structural basis for the full and partial agonist activities of retinoid X receptor alpha ligands with an iso-butoxy and an isopropyl group. Biochem.Biophys.Res.Commun. (2024)

Release Date

2020-11-18

Peptides

Retinoic acid receptor RXR-alpha: AC
Nuclear receptor coactivator 2: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

B
B

D
D

Retinoic acid receptor RXR-alpha

Nuclear receptor coactivator 2

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