SMTL ID : 6jsg.1

Crystal Structure of BACE1 in complex with N-{3-[(4S)-2-amino-4-methyl-5,6-dihydro-4H-1,3-thiazin-4-yl]-4-fluorophenyl}-5-chloropyridine-2-carboxamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

3 x IOD: IODIDE ION(Non-functional Binders)

IOD.1: 4 residues within 4Å: Chain A: H.68, T.126, E.127, S.128 Ligand excluded by PLIP IOD.2: 1 residues within 4Å: Chain A: R.372 Ligand excluded by PLIP IOD.3: 2 residues within 4Å: Chain A: H.68, K.130 Ligand excluded by PLIP

1 x NA: SODIUM ION(Non-functional Binders)

NA.4: 3 residues within 4Å: Chain A: Q.96, K.130 Ligands: C6U.7 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.130

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 3 residues within 4Å: Chain A: R.73, Y.74, Q.76 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.74, A:Y.74, A:Q.76 GOL.6: 1 residues within 4Å: Chain A: K.344 No protein-ligand interaction detected (PLIP)

1 x C6U: N-[3-[(4S)-2-azanyl-4-methyl-5,6-dihydro-1,3-thiazin-4-yl]-4-fluoranyl-phenyl]-5-chloranyl-pyridine-2-carboxamide(Non-covalent)

C6U.7: 18 residues within 4Å: Chain A: G.34, Q.35, G.36, L.53, D.55, G.57, Y.94, F.131, I.133, W.138, I.141, D.251, S.252, G.253, T.254, T.255, A.358 Ligands: NA.4 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:F.131, A:I.141 Hydrogen bonds: A:D.251, A:G.253

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fujimoto, K. et al., Structure-Based Design of Selective beta-Site Amyloid Precursor Protein Cleaving Enzyme 1 (BACE1) Inhibitors: Targeting the Flap to Gain Selectivity over BACE2. J.Med.Chem. (2019)

Release Date

2019-08-28

Peptides

Beta-secretase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-secretase 1

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