SMTL ID : 7f1d.1

Crystal Structure of BACE1 in complex with N-{3-[(4R,5R,6R)-2-amino-5-fluoro-4,6-dimethyl-5,6-dihydro-4H-1,3-thiazin-4-yl]-4-fluorophenyl}-2H,3H-[1,4]dioxino[2,3-c]pyridine-7-carboxamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

monomer

Ligands

4 x IOD: IODIDE ION(Non-functional Binders)

IOD.1: 4 residues within 4Å: Chain A: H.68, T.126, E.127, S.128 Ligand excluded by PLIP IOD.2: 2 residues within 4Å: Chain A: R.372, R.374 Ligand excluded by PLIP IOD.3: 3 residues within 4Å: Chain A: H.68, D.129, K.130 Ligand excluded by PLIP IOD.4: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP

1 x 0QQ: N-[3-[(4R,5R,6R)-2-azanyl-5-fluoranyl-4,6-dimethyl-5,6-dihydro-1,3-thiazin-4-yl]-4-fluoranyl-phenyl]-2,3-dihydro-[1,4]dioxino[2,3-c]pyridine-7-carboxamide(Non-covalent)

0QQ.5: 19 residues within 4Å: Chain A: G.34, Q.35, G.36, Y.37, L.53, D.55, G.57, Y.94, F.131, I.133, I.141, D.251, S.252, G.253, T.254, T.255, R.330, A.358, E.362 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:Y.94 Hydrogen bonds: A:G.36, A:D.55, A:G.253 Water bridges: A:Q.35

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ueno, T. et al., Discovery of Extremely Selective Fused Pyridine-Derived beta-Site Amyloid Precursor Protein-Cleaving Enzyme (BACE1) Inhibitors with High In Vivo Efficacy through 10s Loop Interactions. J.Med.Chem. (2021)

Release Date

2022-02-23

Peptides

Beta-secretase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-secretase 1

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