SMTL ID : 7n66.1

BACE-1 in complex with ligand 12

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

5 x IOD: IODIDE ION(Non-functional Binders)

IOD.1: 3 residues within 4Å: Chain A: T.126, E.127, S.128 Ligand excluded by PLIP IOD.2: 2 residues within 4Å: Chain A: R.372, R.374 Ligand excluded by PLIP IOD.3: 2 residues within 4Å: Chain A: H.68, K.130 Ligand excluded by PLIP IOD.4: 3 residues within 4Å: Chain A: R.119, E.157, Q.166 Ligand excluded by PLIP IOD.5: 1 residues within 4Å: Chain A: Y.245 Ligand excluded by PLIP

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 3 residues within 4Å: Chain A: R.73, Y.74, Q.76 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.74, A:Q.76

3 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.7: 4 residues within 4Å: Chain A: Y.94, Q.96, K.130 Ligands: 0EW.10 No protein-ligand interaction detected (PLIP) DMS.8: 4 residues within 4Å: Chain A: G.253, T.254, T.255 Ligands: 0EW.10 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.255, A:T.255 Water bridges: A:N.256 DMS.9: 3 residues within 4Å: Chain A: K.241, E.242, Y.245 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:E.242 pi-Cation interactions: A:Y.245

1 x 0EW: N-{3-[(2S,5R)-6-amino-5-(ethanesulfonyl)-2-(fluoromethyl)-5-methyl-2,3,4,5-tetrahydropyridin-2-yl]-4-fluorophenyl}-2,2-difluoro-2H-[1,3]dioxolo[4,5-c]pyridine-6-carboxamide(Non-covalent)

0EW.10: 21 residues within 4Å: Chain A: G.34, Q.35, G.36, Y.37, L.53, D.55, G.57, S.58, Y.94, F.131, I.133, Y.221, D.251, S.252, G.253, T.254, T.255, R.330, A.358 Ligands: DMS.7, DMS.8 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:Y.94, A:Y.221 Hydrogen bonds: A:G.36, A:D.55, A:G.253

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rombouts, F.J.R. et al., JNJ-67569762, A 2-Aminotetrahydropyridine-Based Selective BACE1 Inhibitor Targeting the S3 Pocket: From Discovery to Clinical Candidate. J.Med.Chem. (2021)

Release Date

2021-10-06

Peptides

Beta-secretase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-secretase 1

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