SMTL ID : 6jsz.1

BACE2 xaperone complex with N-{3-[(5R)-3-amino-5-methyl-9,9-dioxo-2,9lambda6-dithia-4-azaspiro[5.5]undec-3-en-5-yl]-4-fluorophenyl}-5-(fluoromethoxy)pyrazine-2-carboxamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.53 Å

Oligo State

hetero-1-1-mer

Ligands

1 x C7O: N-[3-[(5R)-3-azanyl-5-methyl-9,9-bis(oxidanylidene)-2,9$l^{6}-dithia-4-azaspiro[5.5]undec-3-en-5-yl]-4-fluoranyl-phenyl]-5-(fluoranylmethoxy)pyrazine-2-carboxamide(Non-covalent)

C7O.1: 19 residues within 4Å: Chain A: G.15, R.16, G.17, Y.18, L.34, D.36, G.38, S.39, V.73, Y.75, F.112, W.119, I.122, D.229, S.230, G.231, T.232, T.233, A.335 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:L.34, A:W.119, A:I.122 Hydrogen bonds: A:G.17, A:D.229, A:G.231, A:T.233

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 7 residues within 4Å: Chain A: K.67, N.102, S.136, E.138 Chain B: S.30, A.31, I.32 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fujimoto, K. et al., Structure-Based Design of Selective beta-Site Amyloid Precursor Protein Cleaving Enzyme 1 (BACE1) Inhibitors: Targeting the Flap to Gain Selectivity over BACE2. J.Med.Chem. (2019)

Release Date

2019-08-28

Peptides

Beta-secretase 2: A
XAPERONE: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
D

Beta-secretase 2

XAPERONE

Related Entries With Identical Sequence