- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.60 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x ZN: ZINC ION(Non-covalent)
- 7 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)(Non-covalent)
NAG.2: 4 residues within 4Å:- Chain A: N.132, R.141, Y.142, G.143
No protein-ligand interaction detected (PLIP)NAG.7: 2 residues within 4Å:- Chain B: N.132, R.141
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:N.132
NAG.8: 5 residues within 4Å:- Chain B: E.78, A.164, R.165, F.168, N.169
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:E.78, B:F.168
- Hydrogen bonds: B:N.169
NAG.13: 5 residues within 4Å:- Chain A: F.433
- Chain C: N.132, R.141, Y.142, G.143
2 PLIP interactions:1 interactions with chain A, 1 interactions with chain C- Hydrogen bonds: A:F.433, C:N.132
NAG.14: 5 residues within 4Å:- Chain A: L.451
- Chain B: P.54, R.55
- Chain C: N.169
- Chain D: P.71
2 PLIP interactions:1 interactions with chain C, 1 interactions with chain B- Hydrogen bonds: C:N.169, B:R.55
NAG.19: 5 residues within 4Å:- Chain D: N.132, R.141, Y.142, G.143, E.240
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:N.132
NAG.20: 5 residues within 4Å:- Chain D: E.78, A.164, R.165, F.168, N.169
3 PLIP interactions:3 interactions with chain D- Hydrophobic interactions: D:F.168
- Hydrogen bonds: D:N.169
- Water bridges: D:N.169
- 4 x C5P: CYTIDINE-5'-MONOPHOSPHATE(Non-covalent)(Covalent)
C5P.3: 14 residues within 4Å:- Chain A: G.304, G.305, L.308, R.312, I.317, W.319, D.320, D.322, D.324, Q.397, V.437, N.440, Q.442
- Ligands: MG.4
9 PLIP interactions:9 interactions with chain A- Hydrogen bonds: A:G.305, A:R.312, A:R.312, A:D.320, A:N.440, A:Q.442, A:Q.442
- Water bridges: A:D.322, A:D.324
C5P.9: 18 residues within 4Å:- Chain B: G.304, G.305, L.308, R.312, I.317, W.319, D.320, D.322, D.324, Q.397, F.433, V.437, N.440, P.441, Q.442, Y.443, P.444
- Ligands: MG.10
8 PLIP interactions:8 interactions with chain B- Hydrogen bonds: B:G.305, B:R.312, B:R.312, B:D.320, B:Q.397, B:N.440, B:Q.442, B:Y.443
C5P.15: 11 residues within 4Å:- Chain C: G.305, L.308, R.312, I.317, W.319, D.320, V.437, N.440, P.441, Q.442
- Ligands: MG.16
8 PLIP interactions:8 interactions with chain C- Hydrophobic interactions: C:L.308, C:Q.442
- Hydrogen bonds: C:G.305, C:R.312, C:R.312, C:D.324, C:N.440, C:Q.442
C5P.21: 16 residues within 4Å:- Chain D: G.304, G.305, L.308, R.312, I.317, W.319, D.320, D.324, Q.397, V.437, N.440, P.441, Q.442, Y.443, P.444
- Ligands: MG.22
8 PLIP interactions:8 interactions with chain D- Hydrogen bonds: D:G.305, D:R.312, D:R.312, D:D.320, D:Q.397, D:N.440, D:Q.442, D:Y.443
- 8 x MG: MAGNESIUM ION(Non-covalent)
MG.4: 4 residues within 4Å:- Chain A: D.320, D.322, D.324
- Ligands: C5P.3
3 PLIP interactions:2 interactions with chain A, 1 Ligand-Ligand interactions- Metal complexes: A:D.322, A:D.324, C5P.3
MG.5: 3 residues within 4Å:- Chain A: D.322, D.324, D.376
3 PLIP interactions:2 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:D.322, A:D.376, H2O.1
MG.10: 4 residues within 4Å:- Chain B: D.320, D.322, D.324
- Ligands: C5P.9
3 PLIP interactions:2 interactions with chain B, 1 Ligand-Ligand interactions- Metal complexes: B:D.322, B:D.324, C5P.9
MG.11: 3 residues within 4Å:- Chain B: D.322, D.324, D.376
3 PLIP interactions:3 interactions with chain B- Metal complexes: B:D.322, B:D.324, B:D.376
MG.16: 4 residues within 4Å:- Chain C: D.320, D.322, D.324
- Ligands: C5P.15
3 PLIP interactions:2 interactions with chain C, 1 Ligand-Water interactions- Metal complexes: C:D.322, C:D.324, H2O.6
MG.17: 4 residues within 4Å:- Chain C: D.322, D.324, H.374, D.376
3 PLIP interactions:2 interactions with chain C, 1 Ligand-Water interactions- Metal complexes: C:D.322, C:D.376, H2O.6
MG.22: 4 residues within 4Å:- Chain D: D.320, D.322, D.324
- Ligands: C5P.21
4 PLIP interactions:2 interactions with chain D, 1 Ligand-Water interactions, 1 Ligand-Ligand interactions- Metal complexes: D:D.322, D:D.324, H2O.8, C5P.21
MG.23: 4 residues within 4Å:- Chain D: D.322, D.324, D.376, W.378
4 PLIP interactions:3 interactions with chain D, 1 Ligand-Water interactions- Metal complexes: D:D.322, D:D.324, D:D.376, H2O.8
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kuwabara, N. et al., Crystal structures of fukutin-related protein (FKRP), a ribitol-phosphate transferase related to muscular dystrophy. Nat Commun (2020)
- Release Date
- 2020-01-15
- Peptides
- Fukutin-related protein: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.60 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x ZN: ZINC ION(Non-covalent)
- 7 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)(Non-covalent)
- 4 x C5P: CYTIDINE-5'-MONOPHOSPHATE(Non-covalent)(Covalent)
- 8 x MG: MAGNESIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kuwabara, N. et al., Crystal structures of fukutin-related protein (FKRP), a ribitol-phosphate transferase related to muscular dystrophy. Nat Commun (2020)
- Release Date
- 2020-01-15
- Peptides
- Fukutin-related protein: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D