SMTL ID : 6kgt.1

Crystal structure of Penicillin binding protein 3 (PBP3) from Mycobacterium tuerculosis, complexed with faropenem

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.31 Å

Oligo State

monomer

Ligands

1 x SFR: (2R)-2-[(1S,2R)-1-carboxy-2-hydroxypropyl]-5-[(2R)-oxolan-2-yl]-2,3-dihydro-1,3-thiazole-4-carboxylic acid(Covalent)

SFR.1: 10 residues within 4Å: Chain A: G.268, S.269, A.307, S.324, N.326, T.461, K.475, T.476, G.477, T.478 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:A.307 Hydrogen bonds: A:S.269, A:S.324, A:S.324, A:N.326, A:T.461, A:T.476, A:T.478, A:T.478 Water bridges: A:A.307, A:S.324 Salt bridges: A:K.475

3 x CO: COBALT (II) ION(Non-covalent)

CO.2: 1 residues within 4Å: Chain A: H.535 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.535, H2O.4, H2O.4 CO.3: 1 residues within 4Å: Chain A: H.528 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:H.528, H2O.1, H2O.4, H2O.5 CO.4: 1 residues within 4Å: Chain A: H.185 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.185, H2O.2

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lu, Z. et al., Structures ofMycobacterium tuberculosisPenicillin-Binding Protein 3 in Complex with Fivebeta-Lactam Antibiotics Reveal Mechanism of Inactivation. Mol.Pharmacol. (2020)

Release Date

2020-03-11

Peptides

Penicillin-binding protein PbpB: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Penicillin-binding protein PbpB

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