SMTL ID : 6l1f.1

Crystal structure of PHF20L1 Tudor1 in complex with K142me1 DNMT1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x ARG- SER- MLZ- SER- ASP- GLY: the K142me1 DNMT1 peptide(Non-covalent)

ARG-SER-MLZ-SER-ASP-GLY.1: 8 residues within 4Å: Chain A: D.23, Y.24, L.25, Y.29, F.47, R.49, W.50, Y.54 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:L.25, A:Y.54, A:Y.54 Hydrogen bonds: A:D.23, A:D.23, A:W.50, A:Y.54, A:Y.54 Water bridges: A:E.56 pi-Cation interactions: A:W.50, A:W.50

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lv, M. et al., Conformational Selection in Ligand Recognition by the First Tudor Domain of PHF20L1. J Phys Chem Lett (2020)

Release Date

2020-09-23

Peptides

PHD finger protein 20-like protein 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

PHD finger protein 20-like protein 1

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