SMTL ID : 6l5z.1

Crystal strucutre of AF9 YEATS domain in complex with a cyclopeptide inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.05 Å

Oligo State

monomer

Ligands

1 x EDX- ALO- ALA- EE0- EE3- NH2: SC0-ALO-ALA-SC3-SC4-NH2(Non-covalent)

EDX-ALO-ALA-EE0-EE3-NH2.1: 17 residues within 4Å: Chain A: F.31, H.33, H.59, S.61, F.62, S.79, G.80, Y.81, A.82, G.83, F.84, D.106, F.108, L.109, H.110, L.111, H.114 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:A.82, A:L.109, A:H.114 Hydrogen bonds: A:S.61, A:S.61, A:Y.81, A:A.82, A:G.83, A:G.83, A:G.83, A:L.109, A:H.110, A:L.111 Salt bridges: A:D.106 pi-Stacking: A:F.62, A:H.110

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jiang, Y. et al., Selective Targeting of AF9 YEATS Domain by Cyclopeptide Inhibitors with Preorganized Conformation. J.Am.Chem.Soc. (2020)

Release Date

2020-10-28

Peptides

Protein AF-9: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Protein AF-9

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