SMTL ID : 6ld3.1

Zika NS5 polymerase domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: E.193, H.197, C.202, C.205 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:E.193, A:H.197, A:C.202, A:C.205 ZN.2: 3 residues within 4Å: Chain A: H.468, C.484, C.603 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.468, A:C.484, A:C.603, H2O.3

1 x G8O: 2,4-dimethoxy-5-thiophen-2-yl-benzoic acid(Non-covalent)

G8O.3: 14 residues within 4Å: Chain A: L.267, C.465, S.466, H.467, R.485, M.517, L.521, Y.522, T.550, S.552, H.554, G.555, W.559 Ligands: FB2.4 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:L.521, A:T.550, A:W.559 Hydrogen bonds: A:S.466, A:R.485, A:S.552 Water bridges: A:R.485

1 x FB2: benzenesulfonamide

FB2.4: 5 residues within 4Å: Chain A: R.493, T.549, T.550, W.551 Ligands: G8O.3 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.493, A:T.550, A:W.551

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gharbi-Ayachi, A. et al., Non-nucleoside Inhibitors of Zika Virus RNA-Dependent RNA Polymerase. J.Virol. (2020)

Release Date

2020-08-19

Peptides

RNA-directed RNA polymerase NS5: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

RNA-directed RNA polymerase NS5

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