- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.15 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)
- 3 x MG: MAGNESIUM ION(Non-covalent)
MG.2: 1 residues within 4Å:- Chain A: E.100
6 PLIP interactions:1 interactions with chain A, 5 Ligand-Water interactions- Metal complexes: A:E.100, H2O.3, H2O.3, H2O.4, H2O.5, H2O.6
MG.15: 3 residues within 4Å:- Chain B: D.197, Y.253, G.254
5 PLIP interactions:2 interactions with chain B, 3 Ligand-Water interactions- Metal complexes: B:D.197, B:Y.253, H2O.7, H2O.10, H2O.11
MG.25: 1 residues within 4Å:- Chain C: E.100
6 PLIP interactions:1 interactions with chain C, 5 Ligand-Water interactions- Metal complexes: C:E.100, H2O.13, H2O.15, H2O.17, H2O.17, H2O.17
- 3 x FE2: FE (II) ION(Non-covalent)
FE2.3: 3 residues within 4Å:- Chain A: H.183, H.187, D.333
5 PLIP interactions:4 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:H.183, A:H.187, A:D.333, A:D.333, H2O.5
FE2.16: 4 residues within 4Å:- Chain B: H.183, H.187, D.333
- Ligands: OXY.17
4 PLIP interactions:4 interactions with chain B- Metal complexes: B:H.183, B:H.187, B:D.333, B:D.333
FE2.26: 4 residues within 4Å:- Chain C: H.183, H.187, D.333
- Ligands: OXY.27
4 PLIP interactions:4 interactions with chain C- Metal complexes: C:H.183, C:H.187, C:D.333, C:D.333
- 10 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.4: 5 residues within 4Å:- Chain A: K.66, R.68, L.70, L.121, K.122
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:K.66, A:R.68, A:K.122
- Water bridges: A:R.68
EDO.5: 3 residues within 4Å:- Chain A: D.197, Y.253, E.255
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:Y.253, A:Y.253
EDO.6: 3 residues within 4Å:- Chain A: E.338, V.341, D.342
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:D.342
- Water bridges: A:V.341
EDO.7: 2 residues within 4Å:- Chain A: D.59, G.60
2 PLIP interactions:2 interactions with chain A- Water bridges: A:G.60, A:G.60
EDO.8: 3 residues within 4Å:- Chain A: K.61, P.125, V.126
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:K.61, A:V.126, A:V.126
EDO.9: 4 residues within 4Å:- Chain A: S.86, T.87, R.98, C.105
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:S.86, A:S.86, A:R.98
EDO.10: 2 residues within 4Å:- Chain A: K.194, D.197
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:D.197
EDO.18: 3 residues within 4Å:- Chain B: K.168, E.338, V.341
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:E.338
- Water bridges: B:V.341
EDO.19: 3 residues within 4Å:- Chain B: R.210, L.355, F.356
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:R.210
EDO.28: 6 residues within 4Å:- Chain C: K.66, R.68, L.70, L.121, K.122, G.384
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:K.66, C:K.66, C:R.68, C:K.122
- 6 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
PEG.11: 4 residues within 4Å:- Chain A: K.47, N.52, Q.75
- Chain B: D.342
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:K.47, A:N.52
- Water bridges: A:N.52, A:Q.75
PEG.12: 5 residues within 4Å:- Chain A: Q.75, V.78
- Chain B: W.335, E.338, A.339
3 PLIP interactions:1 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:W.335, A:Q.75
- Water bridges: A:Q.75
PEG.20: 4 residues within 4Å:- Chain B: K.47, N.52, Q.75
- Chain C: D.342
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:K.47, B:K.47, B:N.52
- Water bridges: B:K.47
PEG.21: 6 residues within 4Å:- Chain B: F.34, K.36, L.161, G.162, F.317, E.318
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:K.36, B:E.318, B:E.318
PEG.29: 4 residues within 4Å:- Chain A: D.342
- Chain C: K.47, N.52, Q.75
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:K.47, C:N.52
PEG.30: 3 residues within 4Å:- Chain C: N.152, D.155, D.157
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:N.152, C:D.157
- 5 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
PGE.13: 5 residues within 4Å:- Chain A: N.196, K.256, N.277, K.320, W.321
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:K.256, A:K.320
PGE.22: 6 residues within 4Å:- Chain B: Q.75, S.77, V.78
- Chain C: W.335, E.338, A.339
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:S.77
- Water bridges: B:Q.75
PGE.23: 10 residues within 4Å:- Chain B: I.184, L.200, V.258, A.259, V.272, F.275, Q.282, F.329, N.330
- Ligands: OXY.17
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:E.284, B:N.330
- Water bridges: B:V.258
PGE.31: 3 residues within 4Å:- Chain C: E.37, K.44, T.45
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:T.45
PGE.32: 4 residues within 4Å:- Chain C: V.236, V.238, F.239, E.240
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:F.239, C:E.240, C:E.240
- 2 x OXY: OXYGEN MOLECULE(Non-covalent)
OXY.17: 7 residues within 4Å:- Chain B: H.183, H.187, F.329, N.330, D.333
- Ligands: FE2.16, PGE.23
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:N.330
OXY.27: 6 residues within 4Å:- Chain C: H.183, H.187, F.329, N.330, D.333
- Ligands: FE2.26
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:N.330
- Water bridges: C:N.177
- 1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wang, Y.X. et al., Oxygen-exposed reduced terminal oxygenase in carbazole 1,9a-dioxygenase. To Be Published
- Release Date
- 2021-01-27
- Peptides
- Terminal oxygenase component of carbazole: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
C
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.15 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)
- 3 x MG: MAGNESIUM ION(Non-covalent)
- 3 x FE2: FE (II) ION(Non-covalent)
- 10 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 6 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- 5 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
- 2 x OXY: OXYGEN MOLECULE(Non-covalent)
- 1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wang, Y.X. et al., Oxygen-exposed reduced terminal oxygenase in carbazole 1,9a-dioxygenase. To Be Published
- Release Date
- 2021-01-27
- Peptides
- Terminal oxygenase component of carbazole: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
C