- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)
- 3 x FE: FE (III) ION(Non-covalent)
FE.2: 4 residues within 4Å:- Chain A: H.183, H.187, D.333
- Ligands: EHX.3
4 PLIP interactions:4 interactions with chain A- Metal complexes: A:H.183, A:H.187, A:D.333, A:D.333
FE.18: 4 residues within 4Å:- Chain B: H.183, H.187, D.333
- Ligands: 9G0.19
4 PLIP interactions:4 interactions with chain B- Metal complexes: B:H.183, B:H.187, B:D.333, B:D.333
FE.41: 4 residues within 4Å:- Chain C: H.183, H.187, D.333
- Ligands: 9G0.42
4 PLIP interactions:4 interactions with chain C- Metal complexes: C:H.183, C:H.187, C:D.333, C:D.333
- 1 x EHX: (9aR)-9a-(dioxidanyl)-1,9-dihydrocarbazole(Non-covalent)
- 20 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.4: 6 residues within 4Å:- Chain A: K.22, N.170, R.172, E.291, N.292, Y.344
Ligand excluded by PLIPEDO.5: 7 residues within 4Å:- Chain A: R.68, C.69, L.70, G.73
- Chain B: F.343, N.352, I.354
Ligand excluded by PLIPEDO.6: 3 residues within 4Å:- Chain A: W.29, V.126, Q.127
Ligand excluded by PLIPEDO.7: 6 residues within 4Å:- Chain A: R.26, E.51, K.66, K.122, Y.124, H.381
Ligand excluded by PLIPEDO.8: 5 residues within 4Å:- Chain A: T.84, S.86
- Chain B: I.243, G.244, E.246
Ligand excluded by PLIPEDO.21: 4 residues within 4Å:- Chain B: I.334, W.335, E.338
- Ligands: EDO.29
Ligand excluded by PLIPEDO.22: 4 residues within 4Å:- Chain A: V.78
- Chain B: W.335, E.338, A.339
Ligand excluded by PLIPEDO.23: 4 residues within 4Å:- Chain B: W.350, V.351, E.353, L.355
Ligand excluded by PLIPEDO.24: 7 residues within 4Å:- Chain B: K.47, G.50, E.51, N.52, K.66, V.382
- Ligands: PGE.37
Ligand excluded by PLIPEDO.25: 4 residues within 4Å:- Chain B: C.105, D.106
- Chain C: G.244
- Ligands: DMS.39
Ligand excluded by PLIPEDO.26: 9 residues within 4Å:- Chain B: G.41, N.56, I.58, C.82, T.84, K.85, S.86, T.87, W.99
Ligand excluded by PLIPEDO.27: 2 residues within 4Å:- Chain B: D.5
- Ligands: PEG.36
Ligand excluded by PLIPEDO.28: 4 residues within 4Å:- Chain B: E.255, K.256, I.257, P.278
Ligand excluded by PLIPEDO.29: 5 residues within 4Å:- Chain B: I.166, I.167, K.168, E.338
- Ligands: EDO.21
Ligand excluded by PLIPEDO.30: 7 residues within 4Å:- Chain B: K.163, Q.165, L.326, E.327, N.330, N.331, I.334
Ligand excluded by PLIPEDO.43: 6 residues within 4Å:- Chain A: T.242
- Chain C: D.106, I.107, L.108, P.111, I.116
Ligand excluded by PLIPEDO.44: 4 residues within 4Å:- Chain C: N.164, I.166, Y.295
- Ligands: EDO.46
Ligand excluded by PLIPEDO.45: 6 residues within 4Å:- Chain C: K.22, N.170, R.172, E.291, N.292, Y.344
Ligand excluded by PLIPEDO.46: 6 residues within 4Å:- Chain C: F.34, E.37, K.163, N.164
- Ligands: EDO.44, PGE.49
Ligand excluded by PLIPEDO.47: 1 residues within 4Å:- Chain C: E.255
Ligand excluded by PLIP- 11 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
PEG.9: 6 residues within 4Å:- Chain A: F.34, K.36, K.130, G.131, I.160, G.162
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:I.160
- Water bridges: A:S.35
PEG.10: 4 residues within 4Å:- Chain A: K.256, N.277, P.278
- Ligands: PGE.13
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:K.256, A:N.277
PEG.11: 2 residues within 4Å:- Chain A: K.194, D.197
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:D.197
PEG.12: 6 residues within 4Å:- Chain A: P.17, S.370, E.371, N.373, G.375, I.376
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:E.371, A:N.373, A:I.376
PEG.31: 5 residues within 4Å:- Chain B: F.34, K.130, I.160, L.161, G.162
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:K.130, B:G.162
PEG.32: 7 residues within 4Å:- Chain A: Q.115
- Chain B: R.210, L.355, F.356, E.357, E.360, V.363
4 PLIP interactions:3 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:R.210, B:E.357, B:E.360, A:Q.115
PEG.33: 7 residues within 4Å:- Chain B: V.12, K.13, G.14, W.15, A.16, P.17, E.371
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:V.12, B:G.14, B:A.16, B:E.371
PEG.34: 7 residues within 4Å:- Chain A: P.111
- Chain B: A.205, V.236, P.237, V.238, F.239, E.240
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:A.205, B:V.236, B:F.239, B:E.240, B:E.240
PEG.35: 6 residues within 4Å:- Chain B: S.190, I.191, L.192, M.324, G.328, F.329
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:I.191, B:L.192, B:M.324
PEG.36: 6 residues within 4Å:- Chain B: A.2, V.4, D.5, E.6, L.9
- Ligands: EDO.27
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:D.5, B:E.6
PEG.48: 4 residues within 4Å:- Chain B: Q.115
- Chain C: L.355, F.356, E.360
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:Q.115
- 5 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
PGE.13: 6 residues within 4Å:- Chain A: D.195, N.196, E.316, K.320, W.321
- Ligands: PEG.10
No protein-ligand interaction detected (PLIP)PGE.14: 3 residues within 4Å:- Chain A: D.59, K.85, E.100
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:K.85, A:K.85
PGE.15: 4 residues within 4Å:- Chain A: R.98, C.105, I.116, G.117
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:R.98, A:R.98
PGE.37: 6 residues within 4Å:- Chain B: K.47, N.52, Q.75, D.290
- Chain C: D.342
- Ligands: EDO.24
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:K.47, B:N.52, B:D.290
PGE.49: 10 residues within 4Å:- Chain C: F.34, K.36, E.37, K.130, G.131, C.132, I.160, L.161, G.162
- Ligands: EDO.46
5 PLIP interactions:5 interactions with chain C- Hydrogen bonds: C:K.36, C:E.37, C:E.37, C:K.130, C:G.162
- 3 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)
DMS.16: 3 residues within 4Å:- Chain A: P.143, R.147, Q.374
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:R.147
DMS.38: 4 residues within 4Å:- Chain B: A.199, F.239, Y.253, G.254
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:G.254
DMS.39: 6 residues within 4Å:- Chain B: S.86, T.87, R.98, C.105
- Chain C: I.243
- Ligands: EDO.25
1 PLIP interactions:1 interactions with chain B- Water bridges: B:T.84
- 2 x 9G0: 2'-amino[1,1'-biphenyl]-2,3-diol(Non-covalent)
9G0.19: 15 residues within 4Å:- Chain B: G.178, H.183, I.184, H.187, L.200, A.259, I.262, V.272, F.275, Q.282, E.284, F.329, N.330, D.333
- Ligands: FE.18
11 PLIP interactions:11 interactions with chain B- Hydrophobic interactions: B:I.184, B:L.200, B:A.259, B:I.262, B:V.272, B:F.275, B:F.275, B:F.329
- Hydrogen bonds: B:G.178, B:N.330
- pi-Stacking: B:F.329
9G0.42: 15 residues within 4Å:- Chain C: G.178, H.183, I.184, H.187, L.200, A.259, I.262, V.272, F.275, Q.282, E.284, F.329, N.330, D.333
- Ligands: FE.41
11 PLIP interactions:11 interactions with chain C- Hydrophobic interactions: C:I.184, C:L.200, C:A.259, C:I.262, C:V.272, C:F.275, C:F.275, C:F.329
- Hydrogen bonds: C:G.178, C:N.330
- pi-Stacking: C:F.329
- 1 x MG: MAGNESIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wang, Y.X. et al., Oxygen-exposed carbazole-soaked reduced terminal oxygenase of carbazole 1,9a-dioxygenase with. To Be Published
- Release Date
- 2021-01-27
- Peptides
- Terminal oxygenase component of carbazole: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
C
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)
- 3 x FE: FE (III) ION(Non-covalent)
- 1 x EHX: (9aR)-9a-(dioxidanyl)-1,9-dihydrocarbazole(Non-covalent)
- 20 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 11 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- 5 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
- 3 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)
- 2 x 9G0: 2'-amino[1,1'-biphenyl]-2,3-diol(Non-covalent)
- 1 x MG: MAGNESIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wang, Y.X. et al., Oxygen-exposed carbazole-soaked reduced terminal oxygenase of carbazole 1,9a-dioxygenase with. To Be Published
- Release Date
- 2021-01-27
- Peptides
- Terminal oxygenase component of carbazole: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
C