- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x FE2: FE (II) ION(Non-covalent)
- 3 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)
FES.2: 9 residues within 4Å:- Chain A: C.69, H.71, R.72, V.74, C.90, Y.92, H.93, A.94, W.95
4 PLIP interactions:4 interactions with chain A,- Metal complexes: A:C.69, A:H.71, A:C.90, A:H.93
FES.8: 9 residues within 4Å:- Chain B: C.69, H.71, R.72, V.74, C.90, Y.92, H.93, A.94, W.95
4 PLIP interactions:4 interactions with chain B,- Metal complexes: B:C.69, B:H.71, B:C.90, B:H.93
FES.14: 9 residues within 4Å:- Chain C: C.69, H.71, R.72, V.74, C.90, Y.92, H.93, A.94, W.95
4 PLIP interactions:4 interactions with chain C,- Metal complexes: C:C.69, C:H.71, C:C.90, C:H.93
- 3 x BPY: BIPHENYL-2,3-DIOL(Non-covalent)
BPY.3: 15 residues within 4Å:- Chain A: G.178, H.183, I.184, L.200, A.259, I.262, L.270, V.272, F.275, Q.282, E.284, Y.286, F.329, N.330
- Ligands: FE2.1
14 PLIP interactions:14 interactions with chain A- Hydrophobic interactions: A:I.184, A:L.200, A:A.259, A:I.262, A:V.272, A:F.275, A:F.329, A:F.329
- Hydrogen bonds: A:G.178, A:Y.286
- Water bridges: A:G.178, A:H.183, A:N.330
- pi-Stacking: A:F.275
BPY.9: 15 residues within 4Å:- Chain B: G.178, H.183, I.184, L.200, A.259, I.262, L.270, V.272, F.275, Q.282, E.284, Y.286, F.329, N.330
- Ligands: FE2.7
14 PLIP interactions:14 interactions with chain B- Hydrophobic interactions: B:I.184, B:L.200, B:A.259, B:I.262, B:V.272, B:F.275, B:F.329, B:F.329
- Hydrogen bonds: B:G.178, B:Y.286
- Water bridges: B:G.178, B:H.183, B:N.330
- pi-Stacking: B:F.275
BPY.15: 15 residues within 4Å:- Chain C: G.178, H.183, I.184, L.200, A.259, I.262, L.270, V.272, F.275, Q.282, E.284, Y.286, F.329, N.330
- Ligands: FE2.13
14 PLIP interactions:14 interactions with chain C- Hydrophobic interactions: C:I.184, C:L.200, C:A.259, C:I.262, C:V.272, C:F.275, C:F.329, C:F.329
- Hydrogen bonds: C:G.178, C:Y.286
- Water bridges: C:G.178, C:H.183, C:N.330
- pi-Stacking: C:F.275
- 6 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)
TRS.4: 6 residues within 4Å:- Chain A: I.58, Y.63, K.85, S.86, R.98, E.100
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:R.98, A:E.100
- Water bridges: A:D.59, A:W.99
TRS.6: 3 residues within 4Å:- Chain A: A.114, Q.115, R.118
5 PLIP interactions:4 interactions with chain A, 1 interactions with chain C- Hydrogen bonds: A:A.114
- Water bridges: A:Q.115, A:Q.115, A:Q.119, C:E.357
TRS.10: 6 residues within 4Å:- Chain B: I.58, Y.63, K.85, S.86, R.98, E.100
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:R.98, B:E.100
- Water bridges: B:D.59, B:W.99
TRS.12: 3 residues within 4Å:- Chain B: A.114, Q.115, R.118
5 PLIP interactions:1 interactions with chain A, 4 interactions with chain B- Water bridges: A:E.357, B:Q.115, B:Q.115, B:Q.115
- Hydrogen bonds: B:A.114
TRS.16: 6 residues within 4Å:- Chain C: I.58, Y.63, K.85, S.86, R.98, E.100
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:R.98, C:E.100
- Water bridges: C:D.59, C:W.99
TRS.18: 3 residues within 4Å:- Chain C: A.114, Q.115, R.118
5 PLIP interactions:1 interactions with chain B, 4 interactions with chain C- Water bridges: B:E.357, C:Q.115, C:Q.115, C:Q.115
- Hydrogen bonds: C:A.114
- 3 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)
DMS.5: 3 residues within 4Å:- Chain A: P.43, S.77, V.80
No protein-ligand interaction detected (PLIP)DMS.11: 3 residues within 4Å:- Chain B: P.43, S.77, V.80
No protein-ligand interaction detected (PLIP)DMS.17: 3 residues within 4Å:- Chain C: P.43, S.77, V.80
No protein-ligand interaction detected (PLIP)- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wang, Y.X. et al., Biphenyl-2,3-diol-soaked terminal oxygenase of carbazole 1,9a-dioxygenase. To Be Published
- Release Date
- 2021-01-27
- Peptides
- Terminal oxygenase component of carbazole: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x FE2: FE (II) ION(Non-covalent)
- 3 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)
- 3 x BPY: BIPHENYL-2,3-DIOL(Non-covalent)
- 6 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)
- 3 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wang, Y.X. et al., Biphenyl-2,3-diol-soaked terminal oxygenase of carbazole 1,9a-dioxygenase. To Be Published
- Release Date
- 2021-01-27
- Peptides
- Terminal oxygenase component of carbazole: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
A