SMTL ID : 6m0j.1

Crystal structure of SARS-CoV-2 spike receptor-binding domain bound with ACE2

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.45 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.356, E.357, H.360, E.384 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.356, A:H.360, A:E.384

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 4 residues within 4Å: Chain A: R.151, W.459, W.460, D.481 Ligand excluded by PLIP

5 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 4 residues within 4Å: Chain A: S.402, D.525, S.527, N.528 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.402, A:S.402, A:N.528 NAG.4: 2 residues within 4Å: Chain A: K.8, N.72 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.8 NAG.5: 1 residues within 4Å: Chain A: N.304 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.304 NAG.6: 5 residues within 4Å: Chain A: N.35, T.37, E.39, N.40, Q.322 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.35, A:E.39, A:N.40 NAG.7: 3 residues within 4Å: Chain B: F.20, G.21, N.25 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lan, J. et al., Structure of the SARS-CoV-2 spike receptor-binding domain bound to the ACE2 receptor. Nature (2020)

Release Date

2020-03-18

Peptides

Angiotensin-converting enzyme 2: A
Spike protein S1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
E

Angiotensin-converting enzyme 2

Spike protein S1

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