SMTL ID : 6m4u.1 (1 other biounit)

Crystal structure of FKBP-FRB T2098L mutant in complex with rapamycin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

hetero-1-1-mer

Ligands

1 x RAP: RAPAMYCIN IMMUNOSUPPRESSANT DRUG(Non-covalent)

RAP.1: 22 residues within 4Å: Chain A: Y.29, F.39, D.40, F.49, Q.56, E.57, V.58, I.59, W.62, Y.85, I.93, I.94, F.102 Chain B: L.13, E.14, S.17, R.18, F.21, L.80, D.84, Y.87, F.90 27 PLIP interactions: 15 interactions with chain A, 12 interactions with chain B Hydrophobic interactions: A:Y.29, A:F.39, A:F.49, A:F.49, A:V.58, A:I.59, A:W.62, A:W.62, A:Y.85, A:I.93, A:I.94, B:L.13, B:F.21, B:F.21, B:F.21, B:F.21, B:Y.87, B:Y.87, B:Y.87, B:F.90, B:F.90, B:F.90 Hydrogen bonds: A:D.40, A:D.40, A:I.59, A:Y.85 Water bridges: B:D.84

8 x ZN: ZINC ION(Non-covalent)

ZN.2: 2 residues within 4Å: Chain A: E.57 Chain B: R.91 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.57, A:E.57 ZN.3: 2 residues within 4Å: Chain A: E.110 Ligands: CL.5 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:E.110 ZN.4: 4 residues within 4Å: Chain A: K.50, K.108, E.110 Ligands: CL.6 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:E.110 ZN.7: 3 residues within 4Å: Chain B: H.10, E.14 Ligands: CL.13 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:H.10, B:E.14 ZN.8: 4 residues within 4Å: Chain B: R.58, D.59, H.88, R.92 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.59, B:D.59, B:H.88, H2O.4 ZN.9: 2 residues within 4Å: Chain B: H.6, K.95 4 PLIP interactions: 1 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:H.6, H2O.5, H2O.6, H2O.6 ZN.10: 2 residues within 4Å: Chain B: E.62, E.65 2 PLIP interactions: 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.65, H2O.5 ZN.11: 1 residues within 4Å: Chain B: H.88 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:H.88

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 4 residues within 4Å: Chain A: Q.23, L.109, E.110 Ligands: ZN.3 Ligand excluded by PLIP CL.6: 4 residues within 4Å: Chain A: V.26, K.50, K.108 Ligands: ZN.4 Ligand excluded by PLIP CL.12: 5 residues within 4Å: Chain B: H.6, E.7, H.10, S.94, K.95 Ligand excluded by PLIP CL.13: 3 residues within 4Å: Chain B: H.10, E.14 Ligands: ZN.7 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wu, H.D. et al., Rational design and implementation of a chemically inducible heterotrimerization system. Nat.Methods (2020)

Release Date

2020-08-26

Peptides

Peptidyl-prolyl cis-trans isomerase FKBP1A: A
Serine/threonine-protein kinase mTOR: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Peptidyl-prolyl cis-trans isomerase FKBP1A

Serine/threonine-protein kinase mTOR

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