SMTL ID : 6m4w.1 (2 other biounits)

Crystal structure of MBP fused split FKBP-FRB T2098L mutant in complex with rapamycin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.11 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x GLC- GLC: alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose(Non-covalent)

GLC-GLC.1: 14 residues within 4Å: Chain A: D.17, K.18, W.65, A.66, D.68, R.69, E.114, E.156, P.157, Y.158, F.159, W.233, M.333, W.343 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:W.65, A:E.156, A:Y.158

1 x RAP: RAPAMYCIN IMMUNOSUPPRESSANT DRUG(Non-covalent)

RAP.2: 21 residues within 4Å: Chain A: Y.400 Chain B: F.5, D.6, F.15, Q.22, E.23, V.24, I.25, W.28, Y.51, I.59, I.60, F.68 Chain C: L.13, S.17, R.18, F.21, L.80, W.83, Y.87, F.90 27 PLIP interactions: 13 interactions with chain C, 1 interactions with chain A, 13 interactions with chain B Hydrophobic interactions: C:L.13, C:F.21, C:F.21, C:F.21, C:L.80, C:W.83, C:W.83, C:Y.87, C:Y.87, C:Y.87, C:F.90, C:F.90, C:F.90, A:Y.400, B:F.5, B:F.15, B:F.15, B:V.24, B:W.28, B:W.28, B:Y.51, B:I.59, B:I.59, B:I.60 Hydrogen bonds: B:D.6, B:I.25, B:Y.51

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 1 residues within 4Å: Chain C: Q.45 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wu, H.D. et al., Rational design and implementation of a chemically inducible heterotrimerization system. Nat.Methods (2020)

Release Date

2020-08-26

Peptides

chimera of Maltose/maltodextrin-binding periplasmic protein and Peptidyl-prolyl cis-trans isomerase FKBP1A: A
Peptidyl-prolyl cis-trans isomerase FKBP1A: B
Serine/threonine-protein kinase mTOR: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
D

C
G

chimera of Maltose/maltodextrin-binding periplasmic protein and Peptidyl-prolyl cis-trans isomerase FKBP1A

Peptidyl-prolyl cis-trans isomerase FKBP1A

Serine/threonine-protein kinase mTOR

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