SMTL ID : 6m4u.2 (1 other biounit)

Crystal structure of FKBP-FRB T2098L mutant in complex with rapamycin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

hetero-1-1-mer

Ligands

1 x RAP: RAPAMYCIN IMMUNOSUPPRESSANT DRUG(Non-covalent)

RAP.1: 22 residues within 4Å: Chain A: Y.29, F.39, D.40, F.49, Q.56, E.57, V.58, I.59, W.62, Y.85, I.93, I.94, F.102 Chain B: L.13, E.14, S.17, F.21, L.80, W.83, D.84, Y.87, F.90 26 PLIP interactions: 14 interactions with chain A, 12 interactions with chain B Hydrophobic interactions: A:Y.29, A:F.39, A:F.49, A:W.62, A:Y.85, A:I.93, A:I.94, B:L.13, B:F.21, B:F.21, B:F.21, B:F.21, B:F.21, B:Y.87, B:Y.87, B:Y.87, B:Y.87, B:F.90, B:F.90 Hydrogen bonds: A:Y.29, A:D.40, A:D.40, A:I.59, A:Y.85 Water bridges: A:Q.56, A:Q.56

6 x ZN: ZINC ION(Non-covalent)

ZN.2: 1 residues within 4Å: Chain A: H.97 No protein-ligand interaction detected (PLIP) ZN.5: 2 residues within 4Å: Chain B: H.10, E.14 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:H.10, B:E.14 ZN.6: 1 residues within 4Å: Chain B: G.1 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:G.1 ZN.8: 2 residues within 4Å: Chain B: H.6 Ligands: CL.11 3 PLIP interactions: 1 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:H.6, H2O.5, H2O.6 ZN.9: 4 residues within 4Å: Chain B: R.58, D.59, H.88, R.92 4 PLIP interactions: 2 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.59, B:H.88, H2O.5, H2O.5 ZN.10: 3 residues within 4Å: Chain B: E.34, H.37, Q.64 No protein-ligand interaction detected (PLIP)

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 3 residues within 4Å: Chain A: V.26, K.50, E.110 Ligand excluded by PLIP CL.4: 3 residues within 4Å: Chain A: Q.23, L.109, E.110 Ligand excluded by PLIP CL.11: 3 residues within 4Å: Chain B: W.5, H.6 Ligands: ZN.8 Ligand excluded by PLIP

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.7: 2 residues within 4Å: Chain B: E.62, E.65 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:K.69 Water bridges: B:E.65, B:K.69

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wu, H.D. et al., Rational design and implementation of a chemically inducible heterotrimerization system. Nat.Methods (2020)

Release Date

2020-08-26

Peptides

Peptidyl-prolyl cis-trans isomerase FKBP1A: A
Serine/threonine-protein kinase mTOR: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
F

Peptidyl-prolyl cis-trans isomerase FKBP1A

Serine/threonine-protein kinase mTOR

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