SMTL ID : 6mct.3 (2 other biounits)

A designed pentameric membrane protein stabilized by van der Waals interaction

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-pentamer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: D.1, W.5 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.1, A:W.5 SO4.3: 2 residues within 4Å: Chain B: D.1, W.5 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:D.1, B:D.1

5 x C8E: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE(Non-functional Binders)

C8E.2: 7 residues within 4Å: Chain A: L.3, I.6 Chain B: I.6 Chain C: I.6 Chain D: I.6 Chain E: L.3, I.6 4 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B, 1 interactions with chain E, 1 interactions with chain D Hydrophobic interactions: A:I.6, B:I.6, E:L.3, D:I.6 C8E.4: 11 residues within 4Å: Chain A: L.17, L.24 Chain B: L.17, I.20 Chain C: L.17, L.24 Chain D: L.17, I.20, L.24 Chain E: L.17, L.24 5 PLIP interactions: 2 interactions with chain B, 2 interactions with chain C, 1 interactions with chain D Hydrophobic interactions: B:L.17, B:I.20, C:L.17, C:L.24, D:I.20 C8E.5: 2 residues within 4Å: Chain C: F.8 Ligands: C8E.6 1 PLIP interactions: 1 interactions with chain C Hydrophobic interactions: C:F.8 C8E.6: 5 residues within 4Å: Chain B: L.18 Chain C: F.8, L.12, L.15 Ligands: C8E.5 1 PLIP interactions: 1 interactions with chain C Hydrophobic interactions: C:L.15 C8E.7: 3 residues within 4Å: Chain E: V.21, F.22, R.25 2 PLIP interactions: 2 interactions with chain E Hydrogen bonds: E:R.25, E:R.25

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mravic, M. et al., Packing of apolar side chains enables accurate design of highly stable membrane proteins. Science (2019)

Release Date

2019-04-03

Peptides

mini-eVgL membrane protein: ABCDE

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
K

B
L

C
M

D
N

E
O

Membrane

We predict this structure to be a membrane protein.
Show / Hide

mini-eVgL membrane protein

Related Entries With Identical Sequence