SMTL ID : 6mq2.2 (1 other biounit)

De Novo Design of membrane protein--mini-eVgL membrane protein, C2221 form-2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-10-mer

Ligands

10 x C8E: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE(Non-functional Binders)

C8E.1: 4 residues within 4Å: Chain A: K.4, W.5, F.8 Chain E: F.11 2 PLIP interactions: 1 interactions with chain E, 1 interactions with chain A Hydrophobic interactions: E:F.11, A:W.5 C8E.2: 1 residues within 4Å: Chain A: F.11 No protein-ligand interaction detected (PLIP) C8E.3: 4 residues within 4Å: Chain A: I.20 Chain B: L.24 Chain C: I.20, L.24 4 PLIP interactions: 2 interactions with chain C, 2 interactions with chain A Hydrophobic interactions: C:I.20, C:L.24, A:I.20, A:I.20 C8E.4: 7 residues within 4Å: Chain A: I.6, L.10 Chain B: L.3, L.10 Chain C: I.6 Chain D: I.6 Chain E: I.6 7 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B, 2 interactions with chain C, 2 interactions with chain E Hydrophobic interactions: A:I.6, B:L.3, B:L.10, C:I.6, C:I.6, E:I.6, E:I.6 C8E.5: 5 residues within 4Å: Chain A: L.15, L.16 Chain E: V.21, F.22, R.25 4 PLIP interactions: 2 interactions with chain E, 2 interactions with chain A Hydrophobic interactions: E:V.21, A:L.15, A:L.16 Hydrogen bonds: E:R.25 C8E.6: 4 residues within 4Å: Chain F: K.4, W.5, F.8 Chain J: F.11 2 PLIP interactions: 1 interactions with chain F, 1 interactions with chain J Hydrophobic interactions: F:W.5, J:F.11 C8E.7: 1 residues within 4Å: Chain F: F.11 No protein-ligand interaction detected (PLIP) C8E.8: 4 residues within 4Å: Chain F: I.20 Chain G: L.24 Chain H: I.20, L.24 4 PLIP interactions: 2 interactions with chain F, 2 interactions with chain H Hydrophobic interactions: F:I.20, F:I.20, H:I.20, H:L.24 C8E.9: 7 residues within 4Å: Chain F: I.6, L.10 Chain G: L.3, L.10 Chain H: I.6 Chain I: I.6 Chain J: I.6 7 PLIP interactions: 2 interactions with chain G, 2 interactions with chain J, 1 interactions with chain F, 2 interactions with chain H Hydrophobic interactions: G:L.3, G:L.10, J:I.6, J:I.6, F:I.6, H:I.6, H:I.6 C8E.10: 5 residues within 4Å: Chain F: L.15, L.16 Chain J: V.21, F.22, R.25 4 PLIP interactions: 2 interactions with chain J, 2 interactions with chain F Hydrophobic interactions: J:V.21, F:L.15, F:L.16 Hydrogen bonds: J:R.25

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mravic, M. et al., Packing of apolar side chains enables accurate design of highly stable membrane proteins. Science (2019)

Release Date

2019-04-03

Peptides

mini-eVgL membrane protein: ABCDEFGHIJ

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
A

G
B

H
C

I
D

J
E

Membrane

We predict this structure to be a membrane protein.
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mini-eVgL membrane protein

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