SMTL ID : 6mpw.1

De Novo Design of membrane protein--mini-eVgL membrane protein, C2221 form-1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-pentamer

Ligands

7 x C8E: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE(Non-functional Binders)

C8E.1: 3 residues within 4Å: Chain A: K.4, W.5, F.8 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:W.5, A:F.8 C8E.2: 3 residues within 4Å: Chain A: F.11 Chain B: W.5 Ligands: C8E.3 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:W.5 C8E.3: 2 residues within 4Å: Chain B: W.5 Ligands: C8E.2 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:W.5 C8E.4: 8 residues within 4Å: Chain A: I.20, L.24 Chain B: L.24 Chain C: I.20, L.24 Chain D: L.24 Chain E: L.17, L.24 4 PLIP interactions: 2 interactions with chain C, 1 interactions with chain A, 1 interactions with chain E Hydrophobic interactions: C:I.20, C:L.24, A:I.20, E:L.17 C8E.5: 5 residues within 4Å: Chain C: F.11, V.14 Chain D: W.5, F.8, L.12 7 PLIP interactions: 3 interactions with chain C, 4 interactions with chain D Hydrophobic interactions: C:F.11, C:F.11, C:V.14, D:W.5, D:W.5, D:F.8, D:L.12 C8E.6: 5 residues within 4Å: Chain A: L.3, I.6 Chain C: L.3, I.6 Chain E: I.6 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain C Hydrophobic interactions: A:L.3, A:I.6, A:I.6, C:L.3 C8E.7: 3 residues within 4Å: Chain D: V.7, F.11 Chain E: W.5 2 PLIP interactions: 1 interactions with chain D, 1 interactions with chain E Hydrophobic interactions: D:F.11, E:W.5

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mravic, M. et al., Packing of apolar side chains enables accurate design of highly stable membrane proteins. Science (2019)

Release Date

2019-04-03

Peptides

mini-eVgL membrane protein: ABCDE

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

Membrane

We predict this structure to be a membrane protein.
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mini-eVgL membrane protein

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