SMTL ID : 6mg1.1

C-terminal bZIP domain of human C/EBPbeta with 16bp Methylated Oligonucleotide Containing Consensus Recognition Sequence-C2 Crystal Form

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

homo-dimer

Ligands

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 6 residues within 4Å: Chain A: R.11, R.12, N.15 Chain C: A.11, A.12 Chain D: A.4 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.15 Water bridges: A:R.12, A:N.15 EDO.2: 2 residues within 4Å: Chain C: T.1, A.2 No protein-ligand interaction detected (PLIP) EDO.3: 4 residues within 4Å: Chain C: A.2 Chain D: T.13, A.14, T.15 No protein-ligand interaction detected (PLIP) EDO.4: 6 residues within 4Å: Chain B: R.11, R.12, N.15 Chain C: A.4 Chain D: A.11, A.12 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.12, B:N.15 Water bridges: B:N.15

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 3 residues within 4Å: Chain C: A.2 Chain D: T.15, A.16 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, J. et al., Structural basis for effects of CpA modifications on C/EBP beta binding of DNA. Nucleic Acids Res. (2019)

Release Date

2018-12-12

Peptides

CCAAT/enhancer-binding protein beta: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

CCAAT/enhancer-binding protein beta

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