SMTL ID : 7l4v.1

C-terminal bZIP domain of human C/EBPbeta Bound to DNA with Consensus Recognition with GT Mismatch

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

homo-dimer

Ligands

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 1 residues within 4Å: Chain A: R.62 No protein-ligand interaction detected (PLIP) EDO.2: 5 residues within 4Å: Chain A: R.23, D.24, K.27 Chain D: G.6, C.7 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.24 EDO.3: 3 residues within 4Å: Chain B: R.20, K.21, D.24 2 PLIP interactions: 2 interactions with chain B Water bridges: B:I.17, B:K.21 EDO.4: 3 residues within 4Å: Chain B: Q.53, L.54, E.57 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.57 Water bridges: B:Q.53 EDO.5: 2 residues within 4Å: Chain C: G.7, T.8 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, J. et al., Preferential CEBP binding to T:G mismatches and increased C-to-T human somatic mutations. Nucleic Acids Res. (2021)

Release Date

2021-11-03

Peptides

CCAAT/enhancer-binding protein beta: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

CCAAT/enhancer-binding protein beta

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