SMTL ID : 6mjm.1

Substrate Free Cytochrome P450 3A5 (CYP3A5)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 28 residues within 4Å: Chain A: R.84, I.97, S.98, W.105, R.109, F.116, F.281, A.284, G.285, T.288, T.289, V.292, V.348, A.349, L.352, R.354, P.412, F.413, G.414, T.415, R.418, N.419, C.420, I.421, G.422, A.426, M.430 Ligands: GOL.4 18 PLIP interactions: 17 interactions with chain A, 1 Ligand-Water interactions Hydrophobic interactions: A:I.97, A:F.116, A:A.284, A:V.292, A:V.348, A:A.349, A:F.413, A:F.413, A:I.421 Hydrogen bonds: A:T.415 Water bridges: A:R.354 Salt bridges: A:R.84, A:R.84, A:R.109, A:R.354, A:R.418 Metal complexes: A:C.420, H2O.2

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 4 residues within 4Å: Chain A: Y.32, L.36, R.85 Ligands: GOL.3 No protein-ligand interaction detected (PLIP) GOL.3: 4 residues within 4Å: Chain A: V.29, L.30, R.33 Ligands: GOL.2 No protein-ligand interaction detected (PLIP) GOL.4: 3 residues within 4Å: Chain A: R.84, L.460 Ligands: HEM.1 1 PLIP interactions: 1 interactions with chain A Water bridges: A:A.284

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hsu, M.H. et al., Active-site differences between substrate-free and ritonavir-bound cytochrome P450 (CYP) 3A5 reveal plasticity differences between CYP3A5 and CYP3A4. J.Biol.Chem. (2019)

Release Date

2019-04-03

Peptides

Cytochrome P450 3A5: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cytochrome P450 3A5

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