SMTL ID : 6mqf.1 (2 other biounits)

Myotoxin II from Bothrops moojeni complexed with Acetylsalicylic acid

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.69 Å

Oligo State

homo-dimer

Ligands

3 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.1: 8 residues within 4Å: Chain A: Y.21, C.28, G.29, H.47, K.48, V.92 Ligands: AIN.2, DMS.4 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.29 DMS.3: 7 residues within 4Å: Chain B: Y.21, C.28, G.29, C.44, H.47, V.92 Ligands: AIN.5 No protein-ligand interaction detected (PLIP) DMS.4: 7 residues within 4Å: Chain A: L.2, L.5, P.17, A.18 Chain B: F.115 Ligands: DMS.1, AIN.2 No protein-ligand interaction detected (PLIP)

2 x AIN: 2-(ACETYLOXY)BENZOIC ACID(Non-covalent)

AIN.2: 11 residues within 4Å: Chain A: L.2, L.5, G.22, G.29, V.30, H.47, K.48, Y.51 Chain B: P.114 Ligands: DMS.1, DMS.4 10 PLIP interactions: 1 interactions with chain B, 9 interactions with chain A Hydrophobic interactions: B:P.114, A:L.2, A:L.5, A:V.30, A:Y.51 Water bridges: A:V.30, A:G.31, A:G.31 Salt bridges: A:K.48 pi-Cation interactions: A:K.48 AIN.5: 9 residues within 4Å: Chain A: P.114 Chain B: L.2, G.29, V.30, H.47, K.48, Y.51, K.60 Ligands: DMS.3 11 PLIP interactions: 10 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:L.2, B:V.30, B:Y.51, A:P.114 Water bridges: B:V.30, B:G.31, B:G.31, B:G.31, B:K.60 Salt bridges: B:K.60 pi-Cation interactions: B:K.48

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Salvador, G.H.M. et al., Search for efficient inhibitors of myotoxic activity induced by ophidian phospholipase A2-like proteins using functional, structural and bioinformatics approaches. Sci Rep (2019)

Release Date

2019-03-20

Peptides

Basic phospholipase A2 homolog 2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Basic phospholipase A2 homolog 2

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