SMTL ID : 6mt0.1

Crystal structure of human Pim-1 kinase in complex with a quinazolinone-pyrrolodihydropyrrolone inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x JYG: 3-(1-methylcyclopropyl)-2-[(1-methylcyclopropyl)amino]-8-[(6R)-6-methyl-4-oxo-1,4,5,6-tetrahydropyrrolo[3,4-b]pyrrol-2-yl]quinazolin-4(3H)-one(Non-covalent)

JYG.1: 14 residues within 4Å: Chain A: L.25, G.26, F.30, V.33, A.46, K.48, E.70, L.101, E.102, V.107, N.153, L.155, I.166, D.167 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:L.25, A:F.30, A:A.46, A:L.101, A:V.107, A:L.155, A:I.166 Hydrogen bonds: A:D.167 Water bridges: A:D.167

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 2 residues within 4Å: Chain A: D.89, W.90 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:W.90 GOL.3: 4 residues within 4Å: Chain A: P.104, E.105, D.157, R.160 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.105, A:E.105, A:R.160, A:R.160

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, H.L. et al., Discovery of ( R)-8-(6-Methyl-4-oxo-1,4,5,6-tetrahydropyrrolo[3,4- b]pyrrol-2-yl)-3-(1-methylcyclopropyl)-2-((1-methylcyclopropyl)amino)quinazolin-4(3 H)-one, a Potent and Selective Pim-1/2 Kinase Inhibitor for Hematological Malignancies. J. Med. Chem. (2019)

Release Date

2019-01-16

Peptides

Serine/threonine-protein kinase pim-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Serine/threonine-protein kinase pim-1

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