SMTL ID : 6mu3.1

Anti-HIV-1 Fab 2G12 + Man7 re-refinement

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.33 Å

Oligo State

hetero-2-2-mer

Ligands

2 x BMA- MAN- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose

BMA-MAN-MAN-MAN.1: 12 residues within 4Å: Chain A: G.93, Y.94 Chain B: A.31, H.32, T.33, K.99, G.100, L.104, S.105, D.106, N.107, D.108 7 PLIP interactions: 6 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:D.106, B:A.31, B:T.33, B:T.33, B:D.108, B:D.108, B:D.108, A:G.93 BMA-MAN-MAN-MAN.2: 14 residues within 4Å: Chain C: G.93, Y.94 Chain D: A.31, H.32, T.33, T.53, Y.57, K.99, G.100, L.104, S.105, D.106, N.107, D.108 6 PLIP interactions: 5 interactions with chain D, 1 interactions with chain C Hydrogen bonds: D:D.106, D:A.31, D:T.33, D:T.33, D:D.108, D:D.108, C:G.93

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Calarese, D.A. et al., Dissection of the carbohydrate specificity of the broadly neutralizing anti-HIV-1 antibody 2G12. Proc. Natl. Acad. Sci. U.S.A. (2005)

Release Date

2018-10-31

Peptides

Fab 2G12, light chain: AC
Fab 2G12, heavy chain: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

C
K

B
H

D
M

Fab 2G12, light chain

Fab 2G12, heavy chain

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