SMTL ID : 6n32.1

Anti-HIV-1 Fab 2G12 re-refinement

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

hetero-2-2-mer

Ligands

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: P.8, S.9, T.10 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.9, A:T.10 SO4.2: 4 residues within 4Å: Chain A: K.107, R.108, T.109, V.110 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.110 Salt bridges: A:K.107 SO4.3: 5 residues within 4Å: Chain A: S.121, D.122, E.123 Chain D: P.133, K.224 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain D Hydrogen bonds: A:D.122, A:E.123 Salt bridges: D:K.224 SO4.4: 2 residues within 4Å: Chain C: P.59, S.60 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:S.60 Water bridges: C:R.61, C:R.61 SO4.5: 2 residues within 4Å: Chain C: Q.27, S.28 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:S.28

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Calarese, D.A. et al., Antibody domain exchange is an immunological solution to carbohydrate cluster recognition. Science (2003)

Release Date

2018-11-28

Peptides

Fab 2G12 light chain: AC
Fab 2G12 heavy chain: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

C
M

B
H

D
K

Fab 2G12 light chain

Fab 2G12 heavy chain

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