SMTL ID : 6mub.1

Anti-HIV-1 Fab 2G12 + Man5 re-refinement

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

hetero-2-2-mer

Ligands

2 x BMA- MAN- MAN- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose

BMA-MAN-MAN-MAN-MAN.1: 14 residues within 4Å: Chain A: G.93, Y.94 Chain B: A.31, T.33, T.53, S.54, T.56, K.99, G.100, L.104, S.105, D.106, N.107, D.108 5 PLIP interactions: 4 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:T.53, B:T.33, B:T.33, B:D.108, B:D.108, A:Y.94 BMA-MAN-MAN-MAN-MAN.2: 14 residues within 4Å: Chain C: G.93, Y.94 Chain D: A.31, H.32, T.33, T.53, T.56, K.99, G.100, L.104, S.105, D.106, N.107, D.108 7 PLIP interactions: 5 interactions with chain D, 2 interactions with chain C Hydrogen bonds: D:T.53, C:Y.94, D:H.32, D:T.33, D:T.33, D:D.108, D:D.108, C:Y.94, C:Y.94

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Calarese, D.A. et al., Dissection of the carbohydrate specificity of the broadly neutralizing anti-HIV-1 antibody 2G12. Proc.Natl.Acad.Sci.USA (2005)

Release Date

2018-10-31

Peptides

Fab 2G12, light chain: AC
Fab 2G12, heavy chain: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

C
K

B
H

D
M

Fab 2G12, light chain

Fab 2G12, heavy chain

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