SMTL ID : 6nmi.1

Cryo-EM structure of the human TFIIH core complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-1-mer

Ligands

1 x SF4: IRON/SULFUR CLUSTER(Non-covalent)

SF4.1: 9 residues within 4Å: Chain B: C.116, H.118, V.121, C.134, T.138, C.155, F.157, Y.158, C.190 4 PLIP interactions: 4 interactions with chain B, Metal complexes: B:C.116, B:C.134, B:C.155, B:C.190

6 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain E: C.324, C.327, C.347, C.350 4 PLIP interactions: 4 interactions with chain E Metal complexes: E:C.324, E:C.327, E:C.347, E:C.350 ZN.3: 4 residues within 4Å: Chain E: C.339, C.342, C.361, C.364 4 PLIP interactions: 4 interactions with chain E Metal complexes: E:C.339, E:C.342, E:C.361, E:C.364 ZN.4: 5 residues within 4Å: Chain E: C.270, Q.272, C.273, C.284, C.287 4 PLIP interactions: 4 interactions with chain E Metal complexes: E:C.270, E:C.273, E:C.284, E:C.287 ZN.5: 5 residues within 4Å: Chain F: C.268, C.271, C.282, C.285, T.287 4 PLIP interactions: 4 interactions with chain F Metal complexes: F:C.268, F:C.271, F:C.282, F:C.285 ZN.6: 5 residues within 4Å: Chain H: C.6, C.9, C.31, S.33, C.34 4 PLIP interactions: 4 interactions with chain H Metal complexes: H:C.6, H:C.9, H:C.31, H:C.34 ZN.7: 4 residues within 4Å: Chain H: C.26, H.28, C.46, C.49 4 PLIP interactions: 4 interactions with chain H Metal complexes: H:C.26, H:H.28, H:C.46, H:C.49

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Greber, B.J. et al., The complete structure of the human TFIIH core complex. Elife (2019)

Release Date

2019-03-13

Peptides

General transcription and DNA repair factor IIH helicase subunit XPB: A
General transcription and DNA repair factor IIH helicase subunit XPD: B
General transcription factor IIH subunit 1, p62: C
General transcription factor IIH subunit 4, p52: D
General transcription factor IIH subunit 2, p44: E
General transcription factor IIH subunit 3, p34: F
General transcription factor IIH subunit 5, p8: G
CDK-activating kinase assembly factor MAT1: H

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

General transcription and DNA repair factor IIH helicase subunit XPB

General transcription and DNA repair factor IIH helicase subunit XPD

General transcription factor IIH subunit 1, p62

General transcription factor IIH subunit 4, p52

General transcription factor IIH subunit 2, p44

General transcription factor IIH subunit 3, p34

General transcription factor IIH subunit 5, p8

CDK-activating kinase assembly factor MAT1

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