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SMTL ID : 8wap.1

Structure of transcribing complex 6 (TC6), the initially transcribing complex with Pol II positioned 6nt downstream of TSS.

Coordinates
PDB Format
Method
ELECTRON MICROSCOPY
Oligo State
hetero-1-1-1-1-1-1-1-1-1-1-2-2-2-1-1-2-2-2-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer
Ligands
1 x ILX- TRX- GLY- ILE- GLY- CSX- ASN- HYP: Alpha-amanitin(Non-covalent)
1 x ATP- U- C- A- A- G2L: RNA(Non-covalent)
17 x ZN: ZINC ION(Non-covalent)
1 x SF4: IRON/SULFUR CLUSTER(Non-covalent)
1 x MG: MAGNESIUM ION(Non-covalent)
1 x W0F: [[(2~{S},3~{R},4~{S},5~{R})-5-(2-azanyl-6-oxidanylidene-3~{H}-purin-9-yl)-3-methoxy-4-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate(Covalent)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Chen, X. et al., Structural visualization of transcription initiation in action. Science (2023)
Release Date
2023-12-06
Peptides
CDK-activating kinase assembly factor MAT1: A
General transcription factor IIH subunit 1: B
General transcription factor IIH subunit 2: C
General transcription factor IIH subunit 3: D
General transcription factor IIH subunit 4: E
General transcription factor IIH subunit 5: F
General transcription and DNA repair factor IIH helicase subunit XPB: G
General transcription and DNA repair factor IIH helicase subunit XPD: H
Transcription initiation factor TFIID subunit 1: I
Transcription initiation factor TFIID subunit 2: J
Transcription initiation factor TFIID subunit 4: Kh
Transcription initiation factor TFIID subunit 5: Li
Transcription initiation factor TFIID subunit 6: Mj
Transcription initiation factor TFIID subunit 7: N
Transcription initiation factor TFIID subunit 8: O
Transcription initiation factor TFIID subunit 9: Pk
Transcription initiation factor TFIID subunit 10: Ql
Transcription initiation factor TFIID subunit 12: Rm
Transcription initiation factor IIA subunit 2: S
TATA-box-binding protein: T
Transcription initiation factor IIA beta chain: U
Transcription initiation factor IIB: V
General transcription factor IIF subunit 1: W
General transcription factor IIF subunit 2: X
General transcription factor IIE subunit 1: Y
Transcription initiation factor IIE subunit beta: Z
Transcription initiation factor TFIID subunit 3: 2
Transcription initiation factor TFIID subunit 11: 3
Transcription initiation factor TFIID subunit 13: 4
DNA-directed RNA polymerase subunit: 5
DNA-directed RNA polymerase subunit beta: 6
DNA-directed RNA polymerase II subunit RPB3: 7
DNA-directed RNA polymerase II subunit RPB4: 8
DNA-directed RNA polymerase II subunit E: 9
DNA-directed RNA polymerase II subunit F: a
DNA-directed RNA polymerase II subunit RPB7: b
DNA-directed RNA polymerases I, II, and III subunit RPABC3: c
DNA-directed RNA polymerase II subunit RPB9: d
DNA-directed RNA polymerases I, II, and III subunit RPABC5: e
DNA-directed RNA polymerase II subunit RPB11-a: f
RPB12: g
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
0
B
1
C
2
D
3
E
4
F
5
G
6
H
7
I
A
J
B
K
D
h
d
L
E
i
e
M
F
j
f
N
G
O
H
P
I
k
i
Q
J
l
j
R
L
m
l
S
O
T
P
U
Q
V
R
W
S
X
T
Y
U
Z
V
2
c
3
k
4
m
5
o
6
p
7
q
8
r
9
s
a
t
b
u
c
v
d
w
e
x
f
y
g
z

CDK-activating kinase assembly factor MAT1

General transcription factor IIH subunit 1

General transcription factor IIH subunit 2

General transcription factor IIH subunit 3

General transcription factor IIH subunit 4

General transcription factor IIH subunit 5

General transcription and DNA repair factor IIH helicase subunit XPB

General transcription and DNA repair factor IIH helicase subunit XPD

Transcription initiation factor TFIID subunit 1

Transcription initiation factor TFIID subunit 2

Transcription initiation factor TFIID subunit 4

Transcription initiation factor TFIID subunit 5

Transcription initiation factor TFIID subunit 6

Transcription initiation factor TFIID subunit 7

Transcription initiation factor TFIID subunit 8

Transcription initiation factor TFIID subunit 9

Transcription initiation factor TFIID subunit 10

Transcription initiation factor TFIID subunit 12

Transcription initiation factor IIA subunit 2

TATA-box-binding protein

Transcription initiation factor IIA beta chain

Transcription initiation factor IIB

General transcription factor IIF subunit 1

General transcription factor IIF subunit 2

General transcription factor IIE subunit 1

Transcription initiation factor IIE subunit beta

Transcription initiation factor TFIID subunit 3

Transcription initiation factor TFIID subunit 11

Transcription initiation factor TFIID subunit 13

DNA-directed RNA polymerase subunit

DNA-directed RNA polymerase subunit beta

DNA-directed RNA polymerase II subunit RPB3

DNA-directed RNA polymerase II subunit RPB4

DNA-directed RNA polymerase II subunit E

DNA-directed RNA polymerase II subunit F

DNA-directed RNA polymerase II subunit RPB7

DNA-directed RNA polymerases I, II, and III subunit RPABC3

DNA-directed RNA polymerase II subunit RPB9

DNA-directed RNA polymerases I, II, and III subunit RPABC5

DNA-directed RNA polymerase II subunit RPB11-a

RPB12

Related Entries With Identical Sequence

2c35.1 | 2c35.2 | 2c35.3 | 2c35.4 | 2f3i.1 | 5flm.1 | 5fur.1 | 5ivw.1 | 5iy6.1 | 5iy7.1 | 5iy8.1 | 5iy9.1 | 5iya.1 | 5iyb.1 | 5iyc.1 | 5iyd.1 | 5o85.1 | 5o85.2 | 5of4.1 | 5oik.1 | 6drd.1 | 6exv.1 | 6gmh.1 | 6gml.1 | 6mzc.1 | 6mzd.1 | 6mzl.1 | 6mzm.1 | 6nmi.1 | 6o9l.1  more...