SMTL ID : 6nwl.1

Structure of the Ancestral Glucocorticoid Receptor 2 ligand binding domain in complex with hydrocortisone and PGC1a coregulator fragment

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

hetero-1-1-mer

Ligands

1 x HCY: (11alpha,14beta)-11,17,21-trihydroxypregn-4-ene-3,20-dione

HCY.1: 21 residues within 4Å: Chain A: M.32, L.35, N.36, L.38, G.39, Q.42, W.72, M.73, M.76, A.77, L.80, R.83, F.95, Q.114, M.118, L.204, F.207, C.208, T.211, V.219, F.221 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:L.35, A:W.72, A:M.76, A:F.207 Hydrogen bonds: A:N.36, A:N.36, A:Q.42, A:R.83, A:Q.114, A:Q.114, A:T.211 Water bridges: A:R.83

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 11 residues within 4Å: Chain A: E.12, P.13, V.15, S.79, W.82, R.83, Y.132, Y.135, K.139 Ligands: EPE.5, GOL.7 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.12, A:E.12, A:R.83 GOL.3: 3 residues within 4Å: Chain A: Y.85, K.86, N.89 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.86 GOL.7: 10 residues within 4Å: Chain A: E.12, P.13, S.45, A.46, W.49, M.76, S.79, Y.135, K.139 Ligands: GOL.2 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.45, A:S.79, A:K.139, A:K.139 Water bridges: A:R.83, A:R.83

1 x TLA: L(+)-TARTARIC ACID(Non-covalent)

TLA.4: 11 residues within 4Å: Chain A: Y.70, S.71, W.72, M.73, S.74, T.146, H.198, V.201, L.205, Q.232, F.236 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:M.73, A:S.74, A:S.74, A:S.74, A:S.74, A:T.146, A:Q.232 Salt bridges: A:H.198

1 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.5: 7 residues within 4Å: Chain A: V.15, W.82, R.83, K.86, Q.87, Y.132 Ligands: GOL.2 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.87 pi-Cation interactions: A:Y.132

2 x SCN: THIOCYANATE ION(Non-functional Binders)

SCN.6: 3 residues within 4Å: Chain A: R.162, I.166, L.245 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.162 SCN.8: 5 residues within 4Å: Chain A: K.192, D.195, H.247, Q.248, K.249 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.247, A:K.249

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, X. et al., First High-Resolution Crystal Structures of the Glucocorticoid Receptor Ligand-Binding Domain-Peroxisome Proliferator-ActivatedgammaCoactivator 1-alphaComplex with Endogenous and Synthetic Glucocorticoids. Mol.Pharmacol. (2019)

Release Date

2019-10-23

Peptides

glucocorticoid receptor: A
Peroxisome proliferator-activated receptor gamma coactivator 1-alpha: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

glucocorticoid receptor

Peroxisome proliferator-activated receptor gamma coactivator 1-alpha

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