SMTL ID : 6ad9.1

Crystal Structure of PPARgamma Ligand Binding Domain in complex with dibenzooxepine derivative compound-9

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

hetero-1-1-mer

Ligands

1 x KK4: 3-[(1E)-1-{8-[(4-methyl-2-propyl-1H-benzimidazol-1-yl)methyl]dibenzo[b,e]oxepin-11(6H)-ylidene}ethyl]-1,2,4-oxadiazol-5(4H)-one(Non-covalent)

KK4.1: 20 residues within 4Å: Chain A: I.91, F.92, Q.93, C.95, Q.96, S.99, H.133, Y.137, L.140, I.151, L.163, F.173, M.174, H.259, L.262, L.263, I.266, M.273, L.275, Y.283 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:I.91, A:F.92, A:F.92, A:Y.137, A:Y.137, A:L.140, A:I.151, A:L.163, A:F.173, A:L.263, A:I.266, A:L.275 Hydrogen bonds: A:S.99, A:Y.283, A:Y.283 pi-Stacking: A:F.92

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yamamoto, K. et al., Development of Dihydrodibenzooxepine Peroxisome Proliferator-Activated Receptor (PPAR) Gamma Ligands of a Novel Binding Mode as Anticancer Agents: Effective Mimicry of Chiral Structures by Olefinic E/ Z-Isomers. J. Med. Chem. (2018)

Release Date

2018-11-14

Peptides

Peroxisome proliferator-activated receptor gamma: A
12-mer peptide from Peroxisome proliferator-activated receptor gamma coactivator 1-alpha: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Peroxisome proliferator-activated receptor gamma

12-mer peptide from Peroxisome proliferator-activated receptor gamma coactivator 1-alpha

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