SMTL ID : 6nzd.1

Cryo-EM Structure of the Lysosomal Folliculin Complex (FLCN-FNIP2-RagA-RagC-Ragulator)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 3.60 Å

Oligo State

hetero-1-1-1-1-1-1-1-1-1-mer

Ligands

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.1: 17 residues within 4Å: Chain F: K.15, S.16, G.17, S.18, G.19, K.20, T.21, S.22, H.127, K.128, D.130, S.163, I.164, W.165 Chain H: R.165, V.169 Chain I: A.150 13 PLIP interactions: 1 interactions with chain I, 10 interactions with chain F, 2 interactions with chain H Hydrogen bonds: I:A.150, F:G.17, F:S.18, F:T.21, F:T.21, F:S.22, F:K.128, F:K.128, F:I.164, H:R.165, H:Q.166 Salt bridges: F:K.20, F:D.130

1 x L8S: 9-{5-O-[(S)-hydroxy{[(R)-hydroxy(thiophosphonooxy)phosphoryl]oxy}phosphoryl]-alpha-L-arabinofuranosyl}-3,9-dihydro-1H-purine-2,6-dione(Non-covalent)

L8S.2: 19 residues within 4Å: Chain G: R.75, R.76, S.77, G.78, K.79, S.80, S.81, T.95, L.96, L.98, S.100, T.101, F.122, P.123, G.124, H.183, K.184, N.186, I.225 17 PLIP interactions: 17 interactions with chain G Hydrogen bonds: G:R.76, G:S.77, G:G.78, G:K.79, G:K.79, G:S.80, G:S.80, G:S.81, G:L.96, G:T.101, G:T.101, G:K.184, G:N.186, G:N.186, G:I.225 Salt bridges: G:R.76, G:K.79

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lawrence, R.E. et al., Structural mechanism of a Rag GTPase activation checkpoint by the lysosomal folliculin complex. Science (2019)

Release Date

2019-11-06

Peptides

Ragulator complex protein LAMTOR1: A
Ragulator complex protein LAMTOR2: B
Ragulator complex protein LAMTOR3: C
Ragulator complex protein LAMTOR4: D
Hepatitis B virus x interacting protein: E
Ras-related GTP-binding protein A: F
Ras-related GTP-binding protein C: G
Folliculin: H
Folliculin-interacting protein 2: I

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

Ragulator complex protein LAMTOR1

Ragulator complex protein LAMTOR2

Ragulator complex protein LAMTOR3

Ragulator complex protein LAMTOR4

Hepatitis B virus x interacting protein

Ras-related GTP-binding protein A

Ras-related GTP-binding protein C

Folliculin

Folliculin-interacting protein 2

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