SMTL ID : 8dhb.1

Active FLCN GAP complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-1-1-1-mer

Ligands

1 x CZC: [(2~{R},3~{S},4~{R},5~{R})-5-[2,6-bis(oxidanylidene)-3~{H}-purin-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl phosphono hydrogen phosphate(Non-covalent)

CZC.1: 18 residues within 4Å: Chain A: L.69, R.70, R.71, S.72, G.73, K.74, S.75, S.76, L.91, N.97, H.178, K.179, N.181, S.219, I.220, Y.221 Chain J: R.207 Ligands: BEF.2 18 PLIP interactions: 16 interactions with chain A, 2 interactions with chain J Hydrogen bonds: A:R.71, A:R.71, A:R.71, A:S.72, A:G.73, A:K.74, A:S.75, A:S.76, A:S.76, A:L.91, A:K.179, A:K.179, A:N.181, A:N.181, A:I.220 Salt bridges: A:K.74, J:R.207, J:R.207

1 x BEF: BERYLLIUM TRIFLUORIDE ION(Non-covalent)

BEF.2: 9 residues within 4Å: Chain A: R.70, K.74, T.96, N.97, F.117, P.118, G.119 Chain J: R.207 Ligands: CZC.1 No protein-ligand interaction detected (PLIP)

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.3: 15 residues within 4Å: Chain B: S.39, G.40, S.41, G.42, K.43, T.44, S.45, D.85, H.150, K.151, D.153, L.154, I.187, W.188 Chain H: L.319 11 PLIP interactions: 11 interactions with chain B Hydrogen bonds: B:G.40, B:S.41, B:G.42, B:K.43, B:T.44, B:T.44, B:S.45, B:D.85, B:K.151 Salt bridges: B:K.43 pi-Cation interactions: B:K.151

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jansen, R.M. et al., Structural basis for FLCN RagC GAP activation in MiT-TFE substrate-selective mTORC1 regulation. Sci Adv (2022)

Release Date

2022-09-28

Peptides

Ras-related GTP-binding protein C: A
Ras-related GTP-binding protein A: B
Ragulator complex protein LAMTOR1: C
Ragulator complex protein LAMTOR2: D
Ragulator complex protein LAMTOR3: E
Ragulator complex protein LAMTOR4: F
Ragulator complex protein LAMTOR5: G
Glutathione S-transferase class-mu 26 kDa isozyme,Sodium-coupled neutral amino acid transporter 9 chimera: H
Folliculin-interacting protein 2: I
Folliculin: J

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

Ras-related GTP-binding protein C

Ras-related GTP-binding protein A

Ragulator complex protein LAMTOR1

Ragulator complex protein LAMTOR2

Ragulator complex protein LAMTOR3

Ragulator complex protein LAMTOR4

Ragulator complex protein LAMTOR5

Glutathione S-transferase class-mu 26 kDa isozyme,Sodium-coupled neutral amino acid transporter 9 chimera

Folliculin-interacting protein 2

Folliculin

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