SMTL ID : 7t3a.1

GATOR1-RAG-RAGULATOR - Inhibitory Complex

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-1-1-1-mer

Ligands

1 x GNP: PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER(Covalent)

GNP.1: 17 residues within 4Å: Chain D: S.16, G.17, S.18, G.19, K.20, T.21, S.22, T.36, R.37, G.40, A.41, T.42, Q.66, K.128, D.130, I.164, W.165 18 PLIP interactions: 18 interactions with chain D Hydrogen bonds: D:S.16, D:S.16, D:S.16, D:G.17, D:S.18, D:G.19, D:K.20, D:T.21, D:T.21, D:S.22, D:T.36, D:T.42, D:Q.66, D:K.128, D:I.164, D:W.165 Salt bridges: D:D.130 pi-Cation interactions: D:K.128

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Egri, S.B. et al., Cryo-EM structures of the human GATOR1-Rag-Ragulator complex reveal a spatial-constraint regulated GAP mechanism. Mol.Cell (2022)

Release Date

2022-04-06

Peptides

GATOR complex protein DEPDC5: A
GATOR complex protein NPRL2: B
GATOR complex protein NPRL3: C
Ras-related GTP-binding protein A: D
Ras-related GTP-binding protein C: E
Ragulator complex protein LAMTOR1: F
Ragulator complex protein LAMTOR2: G
Ragulator complex protein LAMTOR3: H
Ragulator complex protein LAMTOR4: I
Ragulator complex protein LAMTOR5: J

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
K

E
L

F
M

G
N

H
O

I
P

J
Q

GATOR complex protein DEPDC5

GATOR complex protein NPRL2

GATOR complex protein NPRL3

Ras-related GTP-binding protein A

Ras-related GTP-binding protein C

Ragulator complex protein LAMTOR1

Ragulator complex protein LAMTOR2

Ragulator complex protein LAMTOR3

Ragulator complex protein LAMTOR4

Ragulator complex protein LAMTOR5

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