SMTL ID : 6oaz.1 (3 other biounits)

Apo Structure of WT Lipoprotein Lipase in Complex with GPIHBP1 Mutant N78D N82D produced in HEK293-F cells

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.04 Å

Oligo State

hetero-1-1-mer

Ligands

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 5 residues within 4Å: Chain A: G.324, T.325, S.327, T.358, N.359 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:T.358 Hydrogen bonds: A:G.324 NAG.2: 3 residues within 4Å: Chain A: N.43, S.46, D.78 No protein-ligand interaction detected (PLIP)

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 9 residues within 4Å: Chain A: H.53, G.54, W.55, T.56, M.60, Y.61, E.62, W.64, Y.131 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.54, A:W.55, A:E.62, A:E.62 EDO.4: 6 residues within 4Å: Chain A: E.11, S.12, D.85, W.86, S.88, R.89 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.85, A:R.89

2 x CA: CALCIUM ION(Non-covalent)

CA.5: 6 residues within 4Å: Chain A: A.167, P.168, R.170, S.172, D.174, D.175 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:A.167, A:R.170, A:S.172, A:D.175, A:D.175 CA.6: 2 residues within 4Å: Chain A: E.347 Chain B: E.102 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:E.102

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Arora, R. et al., Structure of lipoprotein lipase in complex with GPIHBP1. Proc.Natl.Acad.Sci.USA (2019)

Release Date

2019-05-08

Peptides

Lipoprotein lipase: A
Glycosylphosphatidylinositol-anchored high density lipoprotein-binding protein 1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
E

Lipoprotein lipase

Glycosylphosphatidylinositol-anchored high density lipoprotein-binding protein 1

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