SMTL ID : 6ob0.3 (3 other biounits)

Compound 2 bound structure of WT Lipoprotein Lipase in Complex with GPIHBP1 Mutant N78D N82D produced in HEK293-F cells

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.81 Å

Oligo State

hetero-1-1-mer

Ligands

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 5 residues within 4Å: Chain A: G.324, T.325, E.326, S.327, N.359 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.324, A:T.325, A:N.359 NAG.2: 3 residues within 4Å: Chain A: N.43, S.46, D.78 No protein-ligand interaction detected (PLIP)

2 x M3D: 7-(3-cyano-4-hydroxyphenyl)-N-[2-(morpholin-4-yl)ethyl]dibenzo[b,f]oxepine-10-carboxamide(Non-covalent)

M3D.3: 7 residues within 4Å: Chain A: W.55, V.57, Q.235, L.236, V.237, K.238 Ligands: M3D.4 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:W.55, A:V.57, A:V.57, A:K.238 Hydrogen bonds: A:L.236 M3D.4: 12 residues within 4Å: Chain A: W.55, V.57, H.93, Y.94, P.95, S.132, A.158, P.160, I.194, K.238, H.241 Ligands: M3D.3 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:W.55, A:Y.94, A:Y.94, A:Y.94, A:Y.94, A:Y.94, A:P.95, A:P.160 Hydrogen bonds: A:S.132, A:K.238 pi-Stacking: A:W.55

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.5: 7 residues within 4Å: Chain A: H.53, G.54, W.55, M.60, Y.61, E.62, W.64 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.54, A:M.60, A:E.62 EDO.6: 1 residues within 4Å: Chain A: W.390 No protein-ligand interaction detected (PLIP)

1 x CA: CALCIUM ION(Non-covalent)

CA.7: 4 residues within 4Å: Chain A: A.167, R.170, S.172, D.175 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:R.170, A:S.172, A:D.175, H2O.1, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Arora, R. et al., Structure of lipoprotein lipase in complex with GPIHBP1. Proc.Natl.Acad.Sci.USA (2019)

Release Date

2019-05-08

Peptides

Lipoprotein lipase: A
Glycosylphosphatidylinositol-anchored high density lipoprotein-binding protein 1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
G

Lipoprotein lipase

Glycosylphosphatidylinositol-anchored high density lipoprotein-binding protein 1

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